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Tex9 testis expressed gene 9 [ Mus musculus (house mouse) ]

Gene ID: 21778, updated on 5-Mar-2024

Summary

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Official Symbol
Tex9provided by MGI
Official Full Name
testis expressed gene 9provided by MGI
Primary source
MGI:MGI:1201610
See related
Ensembl:ENSMUSG00000090626 AllianceGenome:MGI:1201610
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
tsec-1; Gm19407
Summary
Is expressed in several structures, including metanephros and testis. Orthologous to human TEX9 (testis expressed 9). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in CNS E11.5 (RPKM 7.8), liver E14 (RPKM 5.5) and 19 other tissues See more
Orthologs
human all
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Genomic context

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Location:
9 D; 9 40.08 cM
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (72365337..72418226, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (72458055..72510945, complement)

Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene zinc finger protein 280D Neighboring gene ribosomal protein L7A pseudogene Neighboring gene STARR-seq mESC enhancer starr_24594 Neighboring gene CapStarr-seq enhancer MGSCv37_chr9:72238180-72238457 Neighboring gene predicted gene 27230 Neighboring gene cDNA sequence BC065403 Neighboring gene STARR-positive B cell enhancer mm9_chr9:72286185-72286486 Neighboring gene CapStarr-seq enhancer MGSCv37_chr9:72297295-72297404 Neighboring gene STARR-positive B cell enhancer ABC_E5084 Neighboring gene meiosis-specific nuclear structural protein 1 Neighboring gene predicted gene, 33004 Neighboring gene RIKEN cDNA 4930509E16 gene Neighboring gene STARR-positive B cell enhancer ABC_E8299 Neighboring gene STARR-positive B cell enhancer ABC_E5085 Neighboring gene regulatory factor X, 7 Neighboring gene 60S ribosomal protein L38 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Molecular cloning and analysis of novel cDNAs specifically expressed in adult mouse testes. Chen L, et al. Biochem Biophys Res Commun, 1997 Nov 17. PMID 9388464
  2. Microarray analysis of Foxa2 mutant mouse embryos reveals novel gene expression and inductive roles for the gastrula organizer and its derivatives. Tamplin OJ, et al. BMC Genomics, 2008 Oct 30. PMID 18973680, Free PMC Article
  3. EUCOMM--the European conditional mouse mutagenesis program. Friedel RH, et al. Brief Funct Genomic Proteomic, 2007 Sep. PMID 17967808
  4. BayGenomics: a resource of insertional mutations in mouse embryonic stem cells. Stryke D, et al. Nucleic Acids Res, 2003 Jan 1. PMID 12520002, Free PMC Article
  5. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Tanaka TS, et al. Proc Natl Acad Sci U S A, 2000 Aug 1. PMID 10922068, Free PMC Article

See all (14) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  
located_in centriolar satellite ISO
Inferred from Sequence Orthology
more info
  
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
testis-expressed protein 9
Names
testis-expressed sequence 9 protein
testis-specifically expressed protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_009359.4 → NP_033385.2  testis-expressed protein 9

    See identical proteins and their annotated locations for NP_033385.2

    Status: VALIDATED

    Source sequence(s)
    AC111135, AK008505, BY240124
    Consensus CDS
    CCDS40685.1
    UniProtKB/Swiss-Prot
    B2RUA2, O54764, Q9D845
    UniProtKB/TrEMBL
    B7ZND8
    Related
    ENSMUSP00000139026.2, ENSMUST00000184125.8
    Conserved Domains (1) summary
    COG1196
    Location:26 → 369
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000075.7 Reference GRCm39 C57BL/6J

    Range
    72365337..72418226 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030244237.2 → XP_030100097.1  testis-expressed protein 9 isoform X2

    UniProtKB/TrEMBL
    B7ZND8
    Conserved Domains (1) summary
    COG1196
    Location:41 → 384
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  2. XM_006511021.5 → XP_006511084.1  testis-expressed protein 9 isoform X3

    UniProtKB/TrEMBL
    B7ZND9

  3. XM_006511019.5 → XP_006511082.1  testis-expressed protein 9 isoform X1

    UniProtKB/TrEMBL
    B7ZND9
    Conserved Domains (1) summary
    COG1196
    Location:41 → 353
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  4. XM_006511022.5 → XP_006511085.1  testis-expressed protein 9 isoform X4

    UniProtKB/TrEMBL
    B7ZND9
    Related
    ENSMUSP00000139386.2, ENSMUST00000183574.8

  5. XM_036154837.1 → XP_036010730.1  testis-expressed protein 9 isoform X7

    UniProtKB/TrEMBL
    Z4YJY6
    Related
    ENSMUSP00000082467.6, ENSMUST00000085358.12
    Conserved Domains (1) summary
    COG1196
    Location:13 → 170
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  6. XM_030244238.1 → XP_030100098.1  testis-expressed protein 9 isoform X6

    UniProtKB/TrEMBL
    V9GX60
    Related
    ENSMUSP00000138999.2, ENSMUST00000184831.8
    Conserved Domains (1) summary
    COG1196
    Location:2 → 184
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  7. XM_036154834.1 → XP_036010727.1  testis-expressed protein 9 isoform X5

    Conserved Domains (1) summary
    TIGR02168
    Location:2 → 187
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  8. XM_036154835.1 → XP_036010728.1  testis-expressed protein 9 isoform X6

    UniProtKB/TrEMBL
    V9GX60
    Conserved Domains (1) summary
    COG1196
    Location:2 → 184
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  9. XM_036154836.1 → XP_036010729.1  testis-expressed protein 9 isoform X6

    UniProtKB/TrEMBL
    V9GX60
    Conserved Domains (1) summary
    COG1196
    Location:2 → 184
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  10. XM_036154838.1 → XP_036010731.1  testis-expressed protein 9 isoform X7

    UniProtKB/TrEMBL
    Z4YJY6
    Conserved Domains (1) summary
    COG1196
    Location:13 → 170
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

RNA

  1. XR_001778850.3 RNA Sequence

  2. XR_004935380.1 RNA Sequence

  3. XR_004935383.1 RNA Sequence

  4. XR_004935381.1 RNA Sequence

  5. XR_004935382.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9D845.1 GenPept UniProtKB/Swiss-Prot:Q9D845

Gene LinkOut

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