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Lhfpl2 lipoma HMGIC fusion partner-like 2 [ Mus musculus (house mouse) ]

Gene ID: 218454, updated on 23-Jun-2021

Summary

Official Symbol
Lhfpl2provided by MGI
Official Full Name
lipoma HMGIC fusion partner-like 2provided by MGI
Primary source
MGI:MGI:2145236
See related
Ensembl:ENSMUSG00000045312
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
vg; vgim; AI447312; AW050335; mKIAA0206; 6030465B15
Expression
Broad expression in subcutaneous fat pad adult (RPKM 19.7), limb E14.5 (RPKM 15.8) and 23 other tissues See more
Orthologs
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Genomic context

See Lhfpl2 in Genome Data Viewer
Location:
13; 13 C3
Exon count:
12
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (94193659..94331918)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (94057152..94195410)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 13 NC_000079.5 (94827751..94965364)

Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 24737 Neighboring gene cytochrome c, pseudogene 3 Neighboring gene uncharacterized LOC115488151 Neighboring gene secretory carrier membrane protein 1 Neighboring gene nucleoside diphosphate kinase B-like

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Spontaneous (1) 
  • Targeted (1) 

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Component Evidence Code Pubs
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
is_active_in membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
LHFPL tetraspan subfamily member 2 protein
Names
lipoma HMGIC fusion partner-like 2 protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_172589.2NP_766177.1  LHFPL tetraspan subfamily member 2 protein

    See identical proteins and their annotated locations for NP_766177.1

    Status: PROVISIONAL

    Source sequence(s)
    AK087506
    Consensus CDS
    CCDS26692.1
    UniProtKB/Swiss-Prot
    Q8BGA2
    Related
    ENSMUSP00000062239.2, ENSMUST00000054274.8
    Conserved Domains (1) summary
    cl21598
    Location:9198
    PMP22_Claudin; PMP-22/EMP/MP20/Claudin family

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000079.7 Reference GRCm39 C57BL/6J

    Range
    94193659..94331918
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030247231.2XP_030103091.1  LHFPL tetraspan subfamily member 2 protein isoform X2

  2. XM_011244639.4XP_011242941.1  LHFPL tetraspan subfamily member 2 protein isoform X1

    See identical proteins and their annotated locations for XP_011242941.1

    UniProtKB/Swiss-Prot
    Q8BGA2
    Conserved Domains (1) summary
    cl21598
    Location:9198
    PMP22_Claudin; PMP-22/EMP/MP20/Claudin family
  3. XM_036158012.1XP_036013905.1  LHFPL tetraspan subfamily member 2 protein isoform X1

    Conserved Domains (1) summary
    cl21598
    Location:9198
    PMP22_Claudin; PMP-22/EMP/MP20/Claudin family
  4. XM_011244640.3XP_011242942.1  LHFPL tetraspan subfamily member 2 protein isoform X1

    See identical proteins and their annotated locations for XP_011242942.1

    UniProtKB/Swiss-Prot
    Q8BGA2
    Conserved Domains (1) summary
    cl21598
    Location:9198
    PMP22_Claudin; PMP-22/EMP/MP20/Claudin family
  5. XM_036158013.1XP_036013906.1  LHFPL tetraspan subfamily member 2 protein isoform X1

    Conserved Domains (1) summary
    cl21598
    Location:9198
    PMP22_Claudin; PMP-22/EMP/MP20/Claudin family
  6. XM_036158014.1XP_036013907.1  LHFPL tetraspan subfamily member 2 protein isoform X1

    Conserved Domains (1) summary
    cl21598
    Location:9198
    PMP22_Claudin; PMP-22/EMP/MP20/Claudin family
  7. XM_011244641.4XP_011242943.1  LHFPL tetraspan subfamily member 2 protein isoform X1

    See identical proteins and their annotated locations for XP_011242943.1

    UniProtKB/Swiss-Prot
    Q8BGA2
    Conserved Domains (1) summary
    cl21598
    Location:9198
    PMP22_Claudin; PMP-22/EMP/MP20/Claudin family
  8. XM_011244642.4XP_011242944.1  LHFPL tetraspan subfamily member 2 protein isoform X1

    See identical proteins and their annotated locations for XP_011242944.1

    UniProtKB/Swiss-Prot
    Q8BGA2
    Conserved Domains (1) summary
    cl21598
    Location:9198
    PMP22_Claudin; PMP-22/EMP/MP20/Claudin family
  9. XM_011244643.4XP_011242945.1  LHFPL tetraspan subfamily member 2 protein isoform X1

    See identical proteins and their annotated locations for XP_011242945.1

    UniProtKB/Swiss-Prot
    Q8BGA2
    Related
    ENSMUSP00000113468.2, ENSMUST00000121618.2
    Conserved Domains (1) summary
    cl21598
    Location:9198
    PMP22_Claudin; PMP-22/EMP/MP20/Claudin family
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