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Scara3 scavenger receptor class A, member 3 [ Mus musculus (house mouse) ]

Gene ID: 219151, updated on 23-Jun-2021

Summary

Official Symbol
Scara3provided by MGI
Official Full Name
scavenger receptor class A, member 3provided by MGI
Primary source
MGI:MGI:2444418
See related
Ensembl:ENSMUSG00000034463
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
CSR; APC7; CSR1; MSLR1; MSRL1; C130058N24Rik
Expression
Broad expression in limb E14.5 (RPKM 18.5), mammary gland adult (RPKM 16.6) and 22 other tissues See more
Orthologs
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Genomic context

See Scara3 in Genome Data Viewer
Location:
14; 14 D1
Exon count:
7
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (66156844..66191427, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (65919394..65953978, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 14 NC_000080.5 (66538232..66572581, complement)

Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 25 Neighboring gene predicted gene, 41181 Neighboring gene predicted gene, 41182 Neighboring gene predicted gene, 19222 Neighboring gene clusterin

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables extracellular matrix structural constituent IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
involved_in extracellular matrix organization IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 
part_of collagen trimer IEA
Inferred from Electronic Annotation
more info
 
located_in endoplasmic reticulum ISO
Inferred from Sequence Orthology
more info
 
is_active_in extracellular matrix IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
is_active_in extracellular space IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
scavenger receptor class A member 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_172604.3NP_766192.1  scavenger receptor class A member 3

    See identical proteins and their annotated locations for NP_766192.1

    Status: PROVISIONAL

    Source sequence(s)
    AC125058, AC126444
    Consensus CDS
    CCDS49524.1
    UniProtKB/Swiss-Prot
    Q8C850
    Related
    ENSMUSP00000046525.4, ENSMUST00000042046.5
    Conserved Domains (1) summary
    pfam01391
    Location:475584
    Collagen; Collagen triple helix repeat (20 copies)

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000080.7 Reference GRCm39 C57BL/6J

    Range
    66156844..66191427 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036158569.1XP_036014462.1  scavenger receptor class A member 3 isoform X1

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