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Fam216b family with sequence similarity 216, member B [ Mus musculus (house mouse) ]

Gene ID: 219170, updated on 30-Apr-2024

Summary

Official Symbol
Fam216bprovided by MGI
Official Full Name
family with sequence similarity 216, member Bprovided by MGI
Primary source
MGI:MGI:2145738
See related
Ensembl:ENSMUSG00000045655 AllianceGenome:MGI:2145738
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
9330158N17
Summary
Orthologous to human FAM216B (family with sequence similarity 216 member B). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in lung adult (RPKM 1.7), ovary adult (RPKM 1.1) and 6 other tissues See more
Orthologs
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Genomic context

Location:
14 D3; 14 41.15 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (78318464..78326447, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (78081024..78089007, complement)

Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene DnaJ heat shock protein family (Hsp40) member C15 Neighboring gene CapStarr-seq enhancer MGSCv37_chr14:78261113-78261296 Neighboring gene STARR-seq mESC enhancer starr_37217 Neighboring gene epithelial stromal interaction 1 Neighboring gene STARR-seq mESC enhancer starr_37218 Neighboring gene predicted gene, 30608 Neighboring gene STARR-seq mESC enhancer starr_37221 Neighboring gene microRNA 1971

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_177629.4NP_808297.1  protein FAM216B

    See identical proteins and their annotated locations for NP_808297.1

    Status: PROVISIONAL

    Source sequence(s)
    AC133176
    Consensus CDS
    CCDS27293.1
    UniProtKB/Swiss-Prot
    Q8CC14
    Related
    ENSMUSP00000064524.5, ENSMUST00000066437.5
    Conserved Domains (1) summary
    pfam15107
    Location:2100
    FAM216B; FAM216B protein family

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000080.7 Reference GRCm39 C57BL/6J

    Range
    78318464..78326447 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)