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5031439G07Rik RIKEN cDNA 5031439G07 gene [ Mus musculus (house mouse) ]

Gene ID: 223739, updated on 5-Mar-2024

Summary

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Official Symbol
5031439G07Rikprovided by MGI
Official Full Name
RIKEN cDNA 5031439G07 geneprovided by MGI
Primary source
MGI:MGI:2444899
See related
Ensembl:ENSMUSG00000036046 AllianceGenome:MGI:2444899
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
mKIAA0930
Summary
Is expressed in nervous system and neural retina. Orthologous to human KIAA0930 (KIAA0930). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in cerebellum adult (RPKM 23.5), CNS E18 (RPKM 16.8) and 28 other tissues See more
Orthologs
human all
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Genomic context

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Location:
15 E2; 15 40.25 cM
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (84828137..84872503, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (84943936..84987971, complement)

Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 4930513L16 gene Neighboring gene predicted gene 29666 Neighboring gene STARR-positive B cell enhancer ABC_E8603 Neighboring gene nucleoporin 50 Neighboring gene microRNA 1249 Neighboring gene predicted gene, 39558 Neighboring gene SET translocation pseudogene Neighboring gene predicted gene, 52194 Neighboring gene uroplakin 3A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Molecular networks involved in mouse cerebral corticogenesis and spatio-temporal regulation of Sox4 and Sox11 novel antisense transcripts revealed by transcriptome profiling. Ling KH, et al. Genome Biol, 2009. PMID 19799774, Free PMC Article
  2. Prediction of the coding sequences of mouse homologues of KIAA gene: IV. The complete nucleotide sequences of 500 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries. Okazaki N, et al. DNA Res, 2004 Jun 30. PMID 15368895
  3. BioID screening of biotinylation sites using the avidin-like protein Tamavidin 2-REV identifies global interactors of stimulator of interferon genes (STING). Motani K, et al. J Biol Chem, 2020 Aug 7. PMID 32554809, Free PMC Article
  4. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Tanaka TS, et al. Proc Natl Acad Sci U S A, 2000 Aug 1. PMID 10922068, Free PMC Article
  5. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article

See all (14) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein KIAA0930 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001033273.3 → NP_001028445.2  uncharacterized protein KIAA0930 homolog isoform 2

    Status: VALIDATED

    Source sequence(s)
    AL513352
    Consensus CDS
    CCDS27715.2
    UniProtKB/Swiss-Prot
    Q3TCU3, Q3UE31
    UniProtKB/TrEMBL
    Q69ZV3
    Related
    ENSMUSP00000037011.7, ENSMUST00000047144.13
    Conserved Domains (1) summary
    pfam09741
    Location:30 → 258
    DUF2045; Uncharacterized conserved protein (DUF2045)

  2. NM_001368660.1 → NP_001355589.1  uncharacterized protein KIAA0930 homolog isoform 1

    Status: VALIDATED

    Source sequence(s)
    AL513352
    UniProtKB/TrEMBL
    Q69ZV3
    Conserved Domains (1) summary
    pfam09741
    Location:37 → 265
    DUF2045; Uncharacterized conserved protein (DUF2045)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000081.7 Reference GRCm39 C57BL/6J

    Range
    84828137..84872503 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036159359.1 → XP_036015252.1  uncharacterized protein KIAA0930 homolog isoform X1

    UniProtKB/TrEMBL
    Q69ZV3
    Conserved Domains (1) summary
    pfam09741
    Location:1 → 224
    DUF2045; Uncharacterized conserved protein (DUF2045)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q3UE31.2 GenPept UniProtKB/Swiss-Prot:Q3UE31

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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