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Golgb1 golgi autoantigen, golgin subfamily b, macrogolgin 1 [ Mus musculus (house mouse) ]

Gene ID: 224139, updated on 16-Oct-2021

Summary

Official Symbol
Golgb1provided by MGI
Official Full Name
golgi autoantigen, golgin subfamily b, macrogolgin 1provided by MGI
Primary source
MGI:MGI:1099447
See related
Ensembl:ENSMUSG00000034243
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
628101; Gm6840; AU042952; mKIAA4151; 4930428L02Rik; 6330407A06Rik; C130074L01Rik; F730017E11Rik
Expression
Ubiquitous expression in bladder adult (RPKM 10.4), placenta adult (RPKM 9.4) and 28 other tissues See more
Orthologs
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Genomic context

See Golgb1 in Genome Data Viewer
Location:
16; 16 B3
Exon count:
24
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (36695455..36753447)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (36875093..36933085)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 16 NC_000082.5 (36885097..36933171)

Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene solute carrier family 15 (H+/peptide transporter), member 2 Neighboring gene 60S ribosomal protein L7a pseudogene Neighboring gene ELL associated factor 2 Neighboring gene IQ calmodulin-binding motif containing 1 Neighboring gene RIKEN cDNA 4930565N06 gene Neighboring gene hematopoietic cell specific Lyn substrate 1 Neighboring gene F-box protein 40

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • KIAA4151, MGC183642

Gene Ontology Provided by MGI

Process Evidence Code Pubs
involved_in chondrocyte proliferation ISO
Inferred from Sequence Orthology
more info
 
involved_in protein localization to pericentriolar material ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
located_in Golgi apparatus IDA
Inferred from Direct Assay
more info
PubMed 
located_in Golgi apparatus ISO
Inferred from Sequence Orthology
more info
PubMed 
is_active_in cis-Golgi network IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in cis-Golgi network IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in endoplasmic reticulum-Golgi intermediate compartment IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in endoplasmic reticulum-Golgi intermediate compartment ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
golgin subfamily B member 1
Names
giantin

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_030035.1NP_084311.1  golgin subfamily B member 1

    See identical proteins and their annotated locations for NP_084311.1

    Status: VALIDATED

    Source sequence(s)
    AC154763
    Consensus CDS
    CCDS49844.1
    UniProtKB/TrEMBL
    E9PVZ8
    Conserved Domains (3) summary
    COG1196
    Location:18372656
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    PRK12704
    Location:11671242
    PRK12704; phosphodiesterase; Provisional
    TIGR02168
    Location:13312164
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000082.7 Reference GRCm39 C57BL/6J

    Range
    36695455..36753447
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006522082.3XP_006522145.1  golgin subfamily B member 1 isoform X1

    See identical proteins and their annotated locations for XP_006522145.1

    UniProtKB/TrEMBL
    E9PVZ8
    Conserved Domains (3) summary
    COG1196
    Location:18372656
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    PRK12704
    Location:11671242
    PRK12704; phosphodiesterase; Provisional
    TIGR02168
    Location:13312164
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
  2. XM_006522084.5XP_006522147.1  golgin subfamily B member 1 isoform X1

    See identical proteins and their annotated locations for XP_006522147.1

    UniProtKB/TrEMBL
    E9PVZ8
    Related
    ENSMUSP00000045239.9, ENSMUST00000039855.9
    Conserved Domains (3) summary
    COG1196
    Location:18372656
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    PRK12704
    Location:11671242
    PRK12704; phosphodiesterase; Provisional
    TIGR02168
    Location:13312164
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
  3. XM_030249086.2XP_030104946.1  golgin subfamily B member 1 isoform X2

    Conserved Domains (4) summary
    COG1196
    Location:18312650
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    PRK00252
    Location:49118
    alaS; alanyl-tRNA synthetase; Reviewed
    PRK12704
    Location:11611236
    PRK12704; phosphodiesterase; Provisional
    TIGR02168
    Location:13252158
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
  4. XM_030249088.1XP_030104948.1  golgin subfamily B member 1 isoform X4

    Conserved Domains (4) summary
    COG1196
    Location:17962615
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    PRK00252
    Location:49118
    alaS; alanyl-tRNA synthetase; Reviewed
    PRK12704
    Location:11261201
    PRK12704; phosphodiesterase; Provisional
    TIGR02168
    Location:12902123
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
  5. XM_017316964.2XP_017172453.1  golgin subfamily B member 1 isoform X1

    UniProtKB/TrEMBL
    E9PVZ8
    Conserved Domains (3) summary
    COG1196
    Location:18372656
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    PRK12704
    Location:11671242
    PRK12704; phosphodiesterase; Provisional
    TIGR02168
    Location:13312164
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
  6. XM_017316963.3XP_017172452.1  golgin subfamily B member 1 isoform X1

    UniProtKB/TrEMBL
    E9PVZ8
    Conserved Domains (3) summary
    COG1196
    Location:18372656
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    PRK12704
    Location:11671242
    PRK12704; phosphodiesterase; Provisional
    TIGR02168
    Location:13312164
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
  7. XM_017316965.2XP_017172454.1  golgin subfamily B member 1 isoform X3

    Conserved Domains (3) summary
    COG1196
    Location:17992618
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    PRK12704
    Location:11291204
    PRK12704; phosphodiesterase; Provisional
    TIGR02168
    Location:12932126
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
  8. XM_030249087.2XP_030104947.1  golgin subfamily B member 1 isoform X4

    Conserved Domains (4) summary
    COG1196
    Location:17962615
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    PRK00252
    Location:49118
    alaS; alanyl-tRNA synthetase; Reviewed
    PRK12704
    Location:11261201
    PRK12704; phosphodiesterase; Provisional
    TIGR02168
    Location:12902123
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
  9. XM_017316966.2XP_017172455.1  golgin subfamily B member 1 isoform X4

    UniProtKB/TrEMBL
    E9QAH1
    Related
    ENSMUSP00000110460.2, ENSMUST00000114812.9
    Conserved Domains (4) summary
    COG1196
    Location:17962615
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    PRK00252
    Location:49118
    alaS; alanyl-tRNA synthetase; Reviewed
    PRK12704
    Location:11261201
    PRK12704; phosphodiesterase; Provisional
    TIGR02168
    Location:12902123
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
  10. XM_011245881.2XP_011244183.1  golgin subfamily B member 1 isoform X2

    See identical proteins and their annotated locations for XP_011244183.1

    Conserved Domains (4) summary
    COG1196
    Location:18312650
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    PRK00252
    Location:49118
    alaS; alanyl-tRNA synthetase; Reviewed
    PRK12704
    Location:11611236
    PRK12704; phosphodiesterase; Provisional
    TIGR02168
    Location:13252158
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
  11. XM_036159899.1XP_036015792.1  golgin subfamily B member 1 isoform X5

    Conserved Domains (4) summary
    COG1196
    Location:17582577
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    PRK00252
    Location:1180
    alaS; alanyl-tRNA synthetase; Reviewed
    TIGR02168
    Location:173958
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    NF033930
    Location:15061892
    pneumo_PspA; pneumococcal surface protein A

RNA

  1. XR_003951781.2 RNA Sequence

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