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D030056L22Rik RIKEN cDNA D030056L22 gene [ Mus musculus (house mouse) ]

Gene ID: 225995, updated on 5-Mar-2024

Summary

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Official Symbol
D030056L22Rikprovided by MGI
Official Full Name
RIKEN cDNA D030056L22 geneprovided by MGI
Primary source
MGI:MGI:3583960
See related
Ensembl:ENSMUSG00000047044 AllianceGenome:MGI:3583960
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Orthologous to human C9orf40 (chromosome 9 open reading frame 40). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in ovary adult (RPKM 26.9), adrenal adult (RPKM 21.7) and 28 other tissues See more
Orthologs
human all
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Genomic context

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Location:
19 B; 19 13.2 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (18690599..18695793)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (18713235..18718429)

Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E7637 Neighboring gene nicotinamide riboside kinase 1 Neighboring gene STARR-positive B cell enhancer ABC_E9992 Neighboring gene carnosine N-methyltransferase 1 Neighboring gene STARR-seq mESC enhancer starr_45692 Neighboring gene STARR-positive B cell enhancer ABC_E3247 Neighboring gene predicted gene, 23238 Neighboring gene predicted gene, 41814 Neighboring gene transient receptor potential cation channel, subfamily M, member 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Libraries enriched for alternatively spliced exons reveal splicing patterns in melanocytes and melanomas. Watahiki A, et al. Nat Methods, 2004 Dec. PMID 15782199
  2. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  3. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
  5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein C9orf40 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001374130.1 → NP_001361059.1  uncharacterized protein C9orf40 homolog isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC134906
    UniProtKB/Swiss-Prot
    Q8BJJ5, Q8VCE4
    UniProtKB/TrEMBL
    Q3UMB2
    Related
    ENSMUSP00000108465.2, ENSMUST00000062753.3
    Conserved Domains (1) summary
    pfam15017
    Location:119 → 162
    WRNPLPNID; Putative WW-binding domain and destruction box

  2. NM_177640.4 → NP_808308.1  uncharacterized protein C9orf40 homolog isoform 2

    See identical proteins and their annotated locations for NP_808308.1

    Status: VALIDATED

    Source sequence(s)
    AC134906
    Consensus CDS
    CCDS29690.1
    UniProtKB/TrEMBL
    Q3U2A5
    Related
    ENSMUSP00000061933.8, ENSMUST00000055792.8
    Conserved Domains (1) summary
    pfam15017
    Location:118 → 161
    WRNPLPNID; Putative WW-binding domain and destruction box

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000085.7 Reference GRCm39 C57BL/6J

    Range
    18690599..18695793
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8VCE4.1 GenPept UniProtKB/Swiss-Prot:Q8VCE4

Gene LinkOut

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