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Zfp85 zinc finger protein 85 [ Mus musculus (house mouse) ]

Gene ID: 22746, updated on 23-Jun-2021

Summary

Official Symbol
Zfp85provided by MGI
Official Full Name
zinc finger protein 85provided by MGI
Primary source
MGI:MGI:107767
See related
Ensembl:ENSMUSG00000058331
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
KRAB; Zfp7; Zfp71; KRAB19; Zfp85-; Rslcan2; Zfp85-rs1
Expression
Broad expression in CNS E14 (RPKM 2.0), CNS E18 (RPKM 1.9) and 22 other tissues See more
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Genomic context

See Zfp85 in Genome Data Viewer
Location:
13 B3; 13 34.74 cM
Exon count:
4
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (67892583..67903321, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (67744464..67755202, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 13 NC_000079.5 (67848737..67856071, complement)

Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene zinc finger protein 738 Neighboring gene zinc finger protein 65 Neighboring gene zinc finger protein 85, opposite strand Neighboring gene zinc finger protein 85, related sequence 1 pseudogene Neighboring gene zinc finger protein 493

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General protein information

Preferred Names
zinc finger protein 85
Names
KRAB-zinc finger protein 71
regulator of sex-limitation candidate 2
zinc finger protein 85, related sequence 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001001130.3NP_001001130.1  zinc finger protein 85

    See identical proteins and their annotated locations for NP_001001130.1

    Status: VALIDATED

    Source sequence(s)
    BC055337, BK001637, DV658296
    Consensus CDS
    CCDS36717.1
    UniProtKB/TrEMBL
    Q7TMC9
    Related
    ENSMUSP00000121202.3, ENSMUST00000144183.3
    Conserved Domains (5) summary
    smart00349
    Location:565
    KRAB; krueppel associated box
    COG5048
    Location:79464
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:83103
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:544
    KRAB; KRAB box
    pfam13465
    Location:375400
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000079.7 Reference GRCm39 C57BL/6J

    Range
    67892583..67903321 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030247245.2XP_030103105.1  zinc finger protein 85 isoform X2

    Conserved Domains (3) summary
    COG5048
    Location:74439
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:5070
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cl02581
    Location:132
    KRAB_A-box; KRAB (Kruppel-associated box) domain -A box
  2. XM_036158035.1XP_036013928.1  zinc finger protein 85 isoform X1

    Conserved Domains (3) summary
    smart00349
    Location:4590
    KRAB; krueppel associated box
    COG5048
    Location:115480
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:91111
    ZF_C2H2; C2H2 Zn finger [structural motif]
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