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C1ql3 C1q-like 3 [ Mus musculus (house mouse) ]

Gene ID: 227580, updated on 13-Jul-2021

Summary

Official Symbol
C1ql3provided by MGI
Official Full Name
C1q-like 3provided by MGI
Primary source
MGI:MGI:2387350
See related
Ensembl:ENSMUSG00000049630
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Adij; C1ql; K100; CTRP13; AI661623; C1qtnf13; 1110065A22Rik
Expression
Biased expression in frontal lobe adult (RPKM 21.1), cortex adult (RPKM 17.2) and 6 other tissues See more
Orthologs
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Genomic context

See C1ql3 in Genome Data Viewer
Location:
2; 2 A1
Exon count:
2
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (13006698..13015675, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (13001887..13010864, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (12923514..12932491, complement)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene predicted gene 13321 Neighboring gene phosphotriesterase related Neighboring gene predicted gene, 52597 Neighboring gene Ras suppressor protein 1 Neighboring gene predicted gene 13270 Neighboring gene cubilin (intrinsic factor-cobalamin receptor)

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables identical protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within regulation of synapse organization IDA
Inferred from Direct Assay
more info
PubMed 
Component Evidence Code Pubs
part_of collagen trimer IEA
Inferred from Electronic Annotation
more info
 
located_in extracellular region IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
complement C1q-like protein 3
Names
C1q and tumor necrosis factor-related protein 13
C1q/TNF-related protein 13
adiponectin j
gliacolin

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_153155.2NP_694795.1  complement C1q-like protein 3 precursor

    See identical proteins and their annotated locations for NP_694795.1

    Status: VALIDATED

    Source sequence(s)
    AB044560, AL929209
    Consensus CDS
    CCDS15692.1
    UniProtKB/Swiss-Prot
    Q9ESN4
    Related
    ENSMUSP00000056188.6, ENSMUST00000061545.7
    Conserved Domains (1) summary
    pfam00386
    Location:128252
    C1q; C1q domain

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    13006698..13015675 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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