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Zp1 zona pellucida glycoprotein 1 [ Mus musculus (house mouse) ]

Gene ID: 22786, updated on 31-Aug-2021

Summary

Official Symbol
Zp1provided by MGI
Official Full Name
zona pellucida glycoprotein 1provided by MGI
Primary source
MGI:MGI:103073
See related
Ensembl:ENSMUSG00000024734
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Restricted expression toward ovary adult (RPKM 22.1) See more
Orthologs
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Genomic context

See Zp1 in Genome Data Viewer
Location:
19 A; 19 7.36 cM
Exon count:
12
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (10891660..10897965, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (10914296..10920601, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 19 NC_000085.5 (10988786..10995091, complement)

Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene transmembrane protein 109 Neighboring gene pre-mRNA processing factor 19 Neighboring gene prostaglandin D2 receptor 2 Neighboring gene coiled-coil domain containing 86 Neighboring gene membrane-spanning 4-domains, subfamily A, member 10

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Pathways from PubChem

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Process Evidence Code Pubs
acts_upstream_of_or_within single fertilization IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in collagen-containing extracellular matrix IDA
Inferred from Direct Assay
more info
PubMed 
located_in egg coat ISO
Inferred from Sequence Orthology
more info
 
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
zona pellucida sperm-binding protein 1
Names
truncated zona pellicida glycoprotein 1
zp-1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_009580.2NP_033606.2  zona pellucida sperm-binding protein 1 precursor

    See identical proteins and their annotated locations for NP_033606.2

    Status: VALIDATED

    Source sequence(s)
    BC125613
    Consensus CDS
    CCDS37918.1
    UniProtKB/Swiss-Prot
    Q62005
    UniProtKB/TrEMBL
    Q059L1
    Related
    ENSMUSP00000025641.2, ENSMUST00000025641.2
    Conserved Domains (3) summary
    smart00018
    Location:226268
    PD; P or trefoil or TFF domain
    smart00241
    Location:271541
    ZP; Zona pellucida (ZP) domain
    pfam00100
    Location:404539
    Zona_pellucida; Zona pellucida-like domain

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000085.7 Reference GRCm39 C57BL/6J

    Range
    10891660..10897965 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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