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Stoml3 stomatin (Epb7.2)-like 3 [ Mus musculus (house mouse) ]

Gene ID: 229277, updated on 2-Oct-2021

Summary

Official Symbol
Stoml3provided by MGI
Official Full Name
stomatin (Epb7.2)-like 3provided by MGI
Primary source
MGI:MGI:2388072
See related
Ensembl:ENSMUSG00000027744
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
sro; SLP3; Epb7.2l
Expression
Biased expression in frontal lobe adult (RPKM 4.2), ovary adult (RPKM 1.9) and 1 other tissue See more
Orthologs
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Genomic context

See Stoml3 in Genome Data Viewer
Location:
3; 3 C
Exon count:
7
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (53396128..53416284)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (53488707..53508863)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 3 NC_000069.5 (53292715..53311574)

Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene predicted gene 16206 Neighboring gene NHL repeat containing 3 Neighboring gene proline and serine rich 1 Neighboring gene predicted gene, 23675 Neighboring gene Fras1 related extracellular matrix protein 2

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within signal transduction IDA
Inferred from Direct Assay
more info
PubMed 
Component Evidence Code Pubs
located_in cilium IDA
Inferred from Direct Assay
more info
PubMed 
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
located_in membrane raft IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
stomatin-like protein 3
Names
SLP-3
stomatin related olfactory protein SRO
stomatin-related olfactory protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_153156.2NP_694796.1  stomatin-like protein 3

    See identical proteins and their annotated locations for NP_694796.1

    Status: VALIDATED

    Source sequence(s)
    AC158162
    Consensus CDS
    CCDS17347.1
    UniProtKB/Swiss-Prot
    Q6PE84
    UniProtKB/TrEMBL
    B2RS16
    Related
    ENSMUSP00000029307.4, ENSMUST00000029307.4
    Conserved Domains (2) summary
    smart00244
    Location:45200
    PHB; prohibitin homologues
    cl19107
    Location:69267
    SPFH_like; core domain of the SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000069.7 Reference GRCm39 C57BL/6J

    Range
    53396128..53416284
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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