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AI504432 expressed sequence AI504432 [ Mus musculus (house mouse) ]

Gene ID: 229694, updated on 8-Feb-2024

Summary

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Official Symbol
AI504432provided by MGI
Official Full Name
expressed sequence AI504432provided by MGI
Primary source
MGI:MGI:2139742
See related
Ensembl:ENSMUSG00000056145 AllianceGenome:MGI:2139742
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
A230102G19
Summary
Is expressed in cerebral cortex subventricular zone. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in CNS E18 (RPKM 4.5), frontal lobe adult (RPKM 4.1) and 13 other tissues See more
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Genomic context

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Location:
3 F2.3; 3 46.59 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (106946820..106961638)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (107039504..107054322)

Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 18162 Neighboring gene predicted gene, 27008 Neighboring gene STARR-seq mESC enhancer starr_08657 Neighboring gene STARR-seq mESC enhancer starr_08658 Neighboring gene STARR-positive B cell enhancer ABC_E826 Neighboring gene STARR-positive B cell enhancer ABC_E7936 Neighboring gene predicted gene, 38712 Neighboring gene potassium voltage-gated channel, shaker-related subfamily, member 3 Neighboring gene STARR-positive B cell enhancer ABC_E4573 Neighboring gene CapStarr-seq enhancer MGSCv37_chr3:106883731-106883985 Neighboring gene STARR-positive B cell enhancer ABC_E7937 Neighboring gene potassium voltage-gated channel, shaker-related subfamily, member 2 Neighboring gene potassium voltage-gated channel, shaker-related subfamily, member 10

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Single-cell gene profiling defines differential progenitor subclasses in mammalian neurogenesis. Kawaguchi A, et al. Development, 2008 Sep. PMID 18725516
  2. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
  3. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_033498.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AI504432, AK030783, AK039146, AK046860
    Related
    ENSMUST00000070085.6

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000069.7 Reference GRCm39 C57BL/6J

    Range
    106946820..106961638
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_173787.3: Suppressed sequence

    Description
    NM_173787.3: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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