Format

Send to:

Choose Destination

E130308A19Rik RIKEN cDNA E130308A19 gene [ Mus musculus (house mouse) ]

Gene ID: 230259, updated on 23-Jun-2021

Summary

Official Symbol
E130308A19Rikprovided by MGI
Official Full Name
RIKEN cDNA E130308A19 geneprovided by MGI
Primary source
MGI:MGI:2442164
See related
Ensembl:ENSMUSG00000045071
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Ubiquitous expression in adrenal adult (RPKM 1.9), whole brain E14.5 (RPKM 1.9) and 28 other tissues See more
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See E130308A19Rik in Genome Data Viewer
Location:
4; 4 B3
Exon count:
9
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (59626116..59757649)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (59626116..59757649)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (59639093..59767175)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene polypyrimidine tract binding protein 3 Neighboring gene hydroxysteroid dehydrogenase like 2 Neighboring gene predicted gene, 54283 Neighboring gene INTS3 and NABP interacting protein Neighboring gene sorting nexin family member 30 Neighboring gene sorting nexin 2 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

Markers

Homology

Clone Names

  • MGC47072

Gene Ontology Provided by MGI

Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 

General protein information

Preferred Names
uncharacterized protein KIAA1958 homolog

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001015681.2NP_001015681.1  uncharacterized protein KIAA1958 homolog isoform 2

    See identical proteins and their annotated locations for NP_001015681.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) encodes the longer isoform (2).
    Source sequence(s)
    AK047478, AK081604
    Consensus CDS
    CCDS18223.1
    UniProtKB/Swiss-Prot
    Q8C4P0
    UniProtKB/TrEMBL
    Q0P6E2
    Related
    ENSMUSP00000065702.5, ENSMUST00000070150.11
    Conserved Domains (1) summary
    pfam12012
    Location:532686
    DUF3504; Domain of unknown function (DUF3504)
  2. NM_153158.5NP_694798.1  uncharacterized protein KIAA1958 homolog isoform 1

    See identical proteins and their annotated locations for NP_694798.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) contains an alternate 3' terminal exon compared to variant 2. It encodes isoform 1, which is shorter and has a distinct C-terminus, compared to isoform 2.
    Source sequence(s)
    AK047478, AK047601, AL806512
    Consensus CDS
    CCDS18224.1
    UniProtKB/Swiss-Prot
    Q8C4P0
    Related
    ENSMUSP00000062493.7, ENSMUST00000052420.7
    Conserved Domains (2) summary
    COG3456
    Location:255411
    COG3456; Predicted component of the type VI protein secretion system, contains a FHA domain [Signal transduction mechanisms, Intracellular trafficking, secretion, and vesicular transport]
    cl00213
    Location:523669
    DNA_BRE_C; DNA breaking-rejoining enzymes, C-terminal catalytic domain

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    59626116..59757649
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006537855.4XP_006537918.1  uncharacterized protein KIAA1958 homolog isoform X1

    See identical proteins and their annotated locations for XP_006537918.1

    Conserved Domains (2) summary
    pfam12012
    Location:577725
    DUF3504; Domain of unknown function (DUF3504)
    pfam17823
    Location:226386
    DUF5585; Family of unknown function (DUF5585)
  2. XM_006537861.3XP_006537924.1  uncharacterized protein KIAA1958 homolog isoform X2

    See identical proteins and their annotated locations for XP_006537924.1

    UniProtKB/Swiss-Prot
    Q8C4P0
    Conserved Domains (2) summary
    COG3456
    Location:255411
    COG3456; Predicted component of the type VI protein secretion system, contains a FHA domain [Signal transduction mechanisms, Intracellular trafficking, secretion, and vesicular transport]
    cl00213
    Location:523669
    DNA_BRE_C; DNA breaking-rejoining enzymes, C-terminal catalytic domain
  3. XM_006537864.4XP_006537927.1  uncharacterized protein KIAA1958 homolog isoform X3

    Conserved Domains (1) summary
    COG3456
    Location:255387
    COG3456; Predicted component of the type VI protein secretion system, contains a FHA domain [Signal transduction mechanisms, Intracellular trafficking, secretion, and vesicular transport]
  4. XM_011250008.4XP_011248310.1  uncharacterized protein KIAA1958 homolog isoform X1

    See identical proteins and their annotated locations for XP_011248310.1

    Conserved Domains (2) summary
    pfam12012
    Location:577725
    DUF3504; Domain of unknown function (DUF3504)
    pfam17823
    Location:226386
    DUF5585; Family of unknown function (DUF5585)
  5. XM_036163991.1XP_036019884.1  uncharacterized protein KIAA1958 homolog isoform X2

    Conserved Domains (2) summary
    COG3456
    Location:255411
    COG3456; Predicted component of the type VI protein secretion system, contains a FHA domain [Signal transduction mechanisms, Intracellular trafficking, secretion, and vesicular transport]
    cl00213
    Location:523669
    DNA_BRE_C; DNA breaking-rejoining enzymes, C-terminal catalytic domain
  6. XM_006537858.3XP_006537921.1  uncharacterized protein KIAA1958 homolog isoform X1

    See identical proteins and their annotated locations for XP_006537921.1

    Conserved Domains (2) summary
    pfam12012
    Location:577725
    DUF3504; Domain of unknown function (DUF3504)
    pfam17823
    Location:226386
    DUF5585; Family of unknown function (DUF5585)

RNA

  1. XR_004941861.1 RNA Sequence

Support Center