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5730409E04Rik RIKEN cDNA 5730409E04Rik gene [ Mus musculus (house mouse) ]

Gene ID: 230757, updated on 5-Mar-2024

Summary

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Official Symbol
5730409E04Rikprovided by MGI
Official Full Name
RIKEN cDNA 5730409E04Rik geneprovided by MGI
Primary source
MGI:MGI:3609248
See related
Ensembl:ENSMUSG00000073755 AllianceGenome:MGI:3609248
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
7530403E16Rik
Summary
Is expressed in dorsal root ganglion; facial ganglion; glossopharyngeal ganglion; and trigeminal ganglion. Orthologous to human C1orf216 (chromosome 1 open reading frame 216). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in adrenal adult (RPKM 17.7), cerebellum adult (RPKM 17.3) and 26 other tissues See more
Orthologs
human all
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Genomic context

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Location:
4 D2.2; 4 60.9 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (126503638..126508164)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (126609854..126614371)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene claspin Neighboring gene microRNA 7119 Neighboring gene 60S ribosomal protein L36a-like Neighboring gene STARR-seq mESC enhancer starr_11405 Neighboring gene predicted gene, 46870 Neighboring gene ribosomal protein S2 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. The protein interactome of collapsin response mediator protein-2 (CRMP2/DPYSL2) reveals novel partner proteins in brain tissue. Martins-de-Souza D, et al. Proteomics Clin Appl, 2015 Oct. PMID 25921334
  2. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
  3. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
UPF0500 protein C1orf216 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001013755.4 → NP_001013777.2  UPF0500 protein C1orf216 homolog

    See identical proteins and their annotated locations for NP_001013777.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Both variants encode the same protein.
    Source sequence(s)
    AL606935
    Consensus CDS
    CCDS18656.1
    UniProtKB/Swiss-Prot
    A2A7K4, Q8BP99
    Related
    ENSMUSP00000095496.4, ENSMUST00000097886.4
    Conserved Domains (1) summary
    pfam15546
    Location:1 → 229
    DUF4653; Domain of unknown function (DUF4653)

  2. NM_001145950.2 → NP_001139422.1  UPF0500 protein C1orf216 homolog

    See identical proteins and their annotated locations for NP_001139422.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AL606935
    Consensus CDS
    CCDS18656.1
    UniProtKB/Swiss-Prot
    A2A7K4, Q8BP99
    Related
    ENSMUSP00000128538.2, ENSMUST00000164362.2
    Conserved Domains (1) summary
    pfam15546
    Location:1 → 229
    DUF4653; Domain of unknown function (DUF4653)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    126503638..126508164
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8BP99.2 GenPept UniProtKB/Swiss-Prot:Q8BP99

Gene LinkOut

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