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5730409E04Rik RIKEN cDNA 5730409E04Rik gene [ Mus musculus (house mouse) ]

Gene ID: 230757, updated on 23-Jun-2021

Summary

Official Symbol
5730409E04Rikprovided by MGI
Official Full Name
RIKEN cDNA 5730409E04Rik geneprovided by MGI
Primary source
MGI:MGI:3609248
See related
Ensembl:ENSMUSG00000073755
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
AI849033; 7530403E16Rik
Expression
Ubiquitous expression in adrenal adult (RPKM 17.7), cerebellum adult (RPKM 17.3) and 26 other tissues See more
Orthologs
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Genomic context

See 5730409E04Rik in Genome Data Viewer
Location:
4; 4 D2.2
Exon count:
2
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (126503647..126508164)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (126609854..126614371)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (126287098..126291615)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene claspin Neighboring gene microRNA 7119 Neighboring gene 60S ribosomal protein L36a-like Neighboring gene predicted gene, 46870 Neighboring gene ribosomal protein S2 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
UPF0500 protein C1orf216 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001013755.3NP_001013777.2  UPF0500 protein C1orf216 homolog

    See identical proteins and their annotated locations for NP_001013777.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Both variants encode the same protein.
    Source sequence(s)
    AK077438, AL606935, BY031484
    Consensus CDS
    CCDS18656.1
    UniProtKB/Swiss-Prot
    Q8BP99
    Related
    ENSMUSP00000095496.4, ENSMUST00000097886.4
    Conserved Domains (1) summary
    pfam15546
    Location:1229
    DUF4653; Domain of unknown function (DUF4653)
  2. NM_001145950.1NP_001139422.1  UPF0500 protein C1orf216 homolog

    See identical proteins and their annotated locations for NP_001139422.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AK077438, AL606935, BY123366
    Consensus CDS
    CCDS18656.1
    UniProtKB/Swiss-Prot
    Q8BP99
    Related
    ENSMUSP00000128538.2, ENSMUST00000164362.2
    Conserved Domains (1) summary
    pfam15546
    Location:1229
    DUF4653; Domain of unknown function (DUF4653)

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    126503647..126508164
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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