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Parm1 prostate androgen-regulated mucin-like protein 1 [ Mus musculus (house mouse) ]

Gene ID: 231440, updated on 23-Jun-2021

Summary

Official Symbol
Parm1provided by MGI
Official Full Name
prostate androgen-regulated mucin-like protein 1provided by MGI
Primary source
MGI:MGI:2443349
See related
Ensembl:ENSMUSG00000034981
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
W91666; 2210012L08Rik; 9130213B05Rik
Expression
Biased expression in adrenal adult (RPKM 96.9), colon adult (RPKM 66.3) and 13 other tissues See more
Orthologs
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Genomic context

See Parm1 in Genome Data Viewer
Location:
5; 5 E2
Exon count:
4
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (91665559..91771870)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (91517700..91624011)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 5 NC_000071.5 (91946726..92053037)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene betacellulin, epidermal growth factor family member Neighboring gene small nucleolar RNA SNORA48 Neighboring gene predicted gene, 42110 Neighboring gene predicted gene, 36222 Neighboring gene tRNA methyltransferase 11-2, pseudogene 1

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in positive regulation of telomerase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in positive regulation of telomerase activity ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
is_active_in Golgi apparatus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in Golgi apparatus ISO
Inferred from Sequence Orthology
more info
 
located_in cytosol ISO
Inferred from Sequence Orthology
more info
 
is_active_in early endosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in early endosome ISO
Inferred from Sequence Orthology
more info
 
located_in endosome IEA
Inferred from Electronic Annotation
more info
 
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
located_in intracellular membrane-bounded organelle ISO
Inferred from Sequence Orthology
more info
 
is_active_in late endosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in late endosome ISO
Inferred from Sequence Orthology
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in plasma membrane ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
prostate androgen-regulated mucin-like protein 1 homolog
Names
PARM-1
prostatic androgen-repressed message-1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_145562.2NP_663537.1  prostate androgen-regulated mucin-like protein 1 homolog precursor

    See identical proteins and their annotated locations for NP_663537.1

    Status: PROVISIONAL

    Source sequence(s)
    AC115723, AC122216
    Consensus CDS
    CCDS39146.1
    UniProtKB/Swiss-Prot
    Q923D3
    Related
    ENSMUSP00000042844.10, ENSMUST00000040576.10
    Conserved Domains (2) summary
    pfam15310
    Location:124219
    VAD1-2; Vitamin A-deficiency (VAD) rat model signalling
    pfam17061
    Location:15296
    PARM; PARM

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    91665559..91771870
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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