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Ccz1 CCZ1 vacuolar protein trafficking and biogenesis associated [ Mus musculus (house mouse) ]

Gene ID: 231874, updated on 23-Jun-2021

Summary

Official Symbol
Ccz1provided by MGI
Official Full Name
CCZ1 vacuolar protein trafficking and biogenesis associatedprovided by MGI
Primary source
MGI:MGI:2141070
See related
Ensembl:ENSMUSG00000029617
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
AU022870
Expression
Ubiquitous expression in CNS E11.5 (RPKM 17.1), CNS E14 (RPKM 15.4) and 28 other tissues See more
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Genomic context

See Ccz1 in Genome Data Viewer
Location:
5; 5 G2
Exon count:
15
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (143924727..143951744, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (143987909..144014883, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 5 NC_000071.5 (144748778..144775722, complement)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 2 alpha kinase 1 Neighboring gene ankyrin repeat domain 61 Neighboring gene aminoacyl tRNA synthetase complex-interacting multifunctional protein 2 Neighboring gene PMS1 homolog2, mismatch repair system component Neighboring gene predicted gene, 24311 Neighboring gene predicted gene, 54312 Neighboring gene predicted gene, 33427 Neighboring gene oncomodulin

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

  • Homologs of the Ccz1 gene: The Ccz1 gene is conserved in human, chimpanzee, Rhesus monkey, dog, cow, rat, chicken, zebrafish, fruit fly, mosquito, C.elegans, A.thaliana, rice, and frog.
  • Orthologs

Clone Names

  • MGC56855

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables guanyl-nucleotide exchange factor activity ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
involved_in vesicle-mediated transport IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
part_of Mon1-Ccz1 complex ISO
Inferred from Sequence Orthology
more info
 
is_active_in intracellular membrane-bounded organelle IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in intracellular membrane-bounded organelle ISO
Inferred from Sequence Orthology
more info
 
located_in lysosome IEA
Inferred from Electronic Annotation
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
vacuolar fusion protein CCZ1 homolog
Names
CCZ1 vacuolar protein trafficking and biogenesis associated homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_177682.3NP_808350.1  vacuolar fusion protein CCZ1 homolog

    See identical proteins and their annotated locations for NP_808350.1

    Status: PROVISIONAL

    Source sequence(s)
    BC048077
    Consensus CDS
    CCDS19846.1
    UniProtKB/Swiss-Prot
    Q8C1Y8
    Related
    ENSMUSP00000031621.10, ENSMUST00000031621.11
    Conserved Domains (1) summary
    pfam08217
    Location:25477
    DUF1712; Fungal domain of unknown function (DUF1712)

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    143924727..143951744 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017320876.2XP_017176365.1  vacuolar fusion protein CCZ1 homolog isoform X1

    Conserved Domains (1) summary
    pfam08217
    Location:1336
    DUF1712; Fungal domain of unknown function (DUF1712)

RNA

  1. XR_004942510.1 RNA Sequence

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