Format

Send to:

Choose Destination

Dera deoxyribose-phosphate aldolase (putative) [ Mus musculus (house mouse) ]

Gene ID: 232449, updated on 23-Jun-2021

Summary

Official Symbol
Deraprovided by MGI
Official Full Name
deoxyribose-phosphate aldolase (putative)provided by MGI
Primary source
MGI:MGI:1913762
See related
Ensembl:ENSMUSG00000030225
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
DEOC; 2010002D22Rik; 2500002K03Rik
Expression
Broad expression in placenta adult (RPKM 22.5), large intestine adult (RPKM 18.1) and 24 other tissues See more
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See Dera in Genome Data Viewer
Location:
6; 6 G1
Exon count:
9
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (137731093..137814894)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (137754577..137837872)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 6 NC_000072.5 (137703098..137786393)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 38915 Neighboring gene serine/threonine kinase receptor associated protein Neighboring gene predicted gene, 38552 Neighboring gene solute carrier family 15, member 5

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
 
enables deoxyribose-phosphate aldolase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables deoxyribose-phosphate aldolase activity ISO
Inferred from Sequence Orthology
more info
 
enables lyase activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in carbohydrate catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in deoxyribonucleoside catabolic process ISO
Inferred from Sequence Orthology
more info
 
involved_in deoxyribonucleotide catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
deoxyribose-phosphate aldolase
Names
2-deoxy-D-ribose 5-phosphate aldolase
2-deoxyribose-5-phosphate aldolase homolog
deoxyriboaldolase
phosphodeoxyriboaldolase
putative deoxyribose-phosphate aldolase
NP_766321.1
XP_036021982.1

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_172733.1NP_766321.1  deoxyribose-phosphate aldolase

    See identical proteins and their annotated locations for NP_766321.1

    Status: PROVISIONAL

    Source sequence(s)
    AK083298
    Consensus CDS
    CCDS20666.1
    UniProtKB/Swiss-Prot
    Q91YP3
    Related
    ENSMUSP00000084959.7, ENSMUST00000087675.9
    Conserved Domains (1) summary
    cd00959
    Location:50277
    DeoC; 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    137731093..137814894
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036166089.1XP_036021982.1  deoxyribose-phosphate aldolase isoform X1

    Conserved Domains (1) summary
    cl21457
    Location:50234
    TIM; TIM-like beta/alpha barrel domains
Support Center