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Spon1 spondin 1, (f-spondin) extracellular matrix protein [ Mus musculus (house mouse) ]

Gene ID: 233744, updated on 23-Jun-2021

Summary

Official Symbol
Spon1provided by MGI
Official Full Name
spondin 1, (f-spondin) extracellular matrix proteinprovided by MGI
Primary source
MGI:MGI:2385287
See related
Ensembl:ENSMUSG00000038156
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
F; FSP; AI666765; AW455831; BC020531; D330035F22Rik
Expression
Broad expression in lung adult (RPKM 35.4), ovary adult (RPKM 16.9) and 17 other tissues See more
Orthologs
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Genomic context

See Spon1 in Genome Data Viewer
Location:
7; 7 F1
Exon count:
16
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (113365235..113642610)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (113765998..114043375)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (120909512..121186889)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 39072 Neighboring gene predicted gene 5600 Neighboring gene predicted gene, 51454 Neighboring gene related RAS viral (r-ras) oncogene 2 Neighboring gene predicted gene, 53365 Neighboring gene coatomer protein complex, subunit beta 1

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_145584.2NP_663559.1  spondin-1 precursor

    See identical proteins and their annotated locations for NP_663559.1

    Status: VALIDATED

    Source sequence(s)
    AC102861, AC118201, AC158213
    Consensus CDS
    CCDS21757.1
    UniProtKB/Swiss-Prot
    Q8VCC9
    Related
    ENSMUSP00000041157.10, ENSMUST00000046687.16
    Conserved Domains (3) summary
    cd08544
    Location:43182
    Reeler; Reeler, the N-terminal domain of reelin, F-spondin, and a variety of other proteins
    pfam00090
    Location:562610
    TSP_1; Thrombospondin type 1 domain
    pfam06468
    Location:205392
    Spond_N; Spondin_N

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    113365235..113642610
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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