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6430571L13Rik RIKEN cDNA 6430571L13 gene [ Mus musculus (house mouse) ]

Gene ID: 235599, updated on 5-Mar-2024

Summary

Official Symbol
6430571L13Rikprovided by MGI
Official Full Name
RIKEN cDNA 6430571L13 geneprovided by MGI
Primary source
MGI:MGI:2445137
See related
Ensembl:ENSMUSG00000037977 AllianceGenome:MGI:2445137
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human C3orf18 (chromosome 3 open reading frame 18). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in cerebellum adult (RPKM 12.0), frontal lobe adult (RPKM 6.6) and 12 other tissues See more
Orthologs
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Genomic context

See 6430571L13Rik in Genome Data Viewer
Location:
9 F1; 9 58.0 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (107217839..107226882)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (107340640..107349683)

Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer mm9_chr9:107198795-107199096 Neighboring gene CapStarr-seq enhancer MGSCv37_chr9:107215338-107215525 Neighboring gene cytokine inducible SH2-containing protein Neighboring gene STARR-seq mESC enhancer starr_25171 Neighboring gene CapStarr-seq enhancer MGSCv37_chr9:107240678-107240861 Neighboring gene STARR-positive B cell enhancer ABC_E6801 Neighboring gene RIKEN cDNA 4930429P21 gene Neighboring gene HemK methyltransferase family member 1 Neighboring gene STARR-seq mESC enhancer starr_25172 Neighboring gene STARR-seq mESC enhancer starr_25173 Neighboring gene calcium channel, voltage-dependent, alpha 2/delta subunit 2 Neighboring gene predicted gene 17141 Neighboring gene predicted gene, 34037

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
uncharacterized protein C3orf18 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_175486.3NP_780695.1  uncharacterized protein C3orf18 homolog

    See identical proteins and their annotated locations for NP_780695.1

    Status: PROVISIONAL

    Source sequence(s)
    AL672070
    Consensus CDS
    CCDS23489.1
    UniProtKB/Swiss-Prot
    Q8BGK9, Q8BUH0
    UniProtKB/TrEMBL
    Q14AT3
    Related
    ENSMUSP00000047093.3, ENSMUST00000042581.4

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000075.7 Reference GRCm39 C57BL/6J

    Range
    107217839..107226882
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)