Format

Send to:

Choose Destination

Zfp65 zinc finger protein 65 [ Mus musculus (house mouse) ]

Gene ID: 235907, updated on 23-Jun-2021

Summary

Official Symbol
Zfp65provided by MGI
Official Full Name
zinc finger protein 65provided by MGI
Primary source
MGI:MGI:107769
See related
Ensembl:ENSMUSG00000071281
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
KRA; KRAB5; pz114; Zfp71-; Zfp71-rs1
Expression
Broad expression in CNS E18 (RPKM 1.3), whole brain E14.5 (RPKM 1.1) and 23 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See Zfp65 in Genome Data Viewer
Location:
13 B3; 13 34.7 cM
Exon count:
7
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (67853425..67877292, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (67705306..67729178, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 13 NC_000079.5 (67806243..67830110, complement)

Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 46439 Neighboring gene zinc finger protein 738 Neighboring gene zinc finger protein 85, opposite strand Neighboring gene zinc finger protein 85 Neighboring gene zinc finger protein 85, related sequence 1 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
zinc finger protein 71, related sequence
Names
zinc finger protein 71, related sequence 1

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_145622.2NP_663597.1  zinc finger protein 71, related sequence

    See identical proteins and their annotated locations for NP_663597.1

    Status: VALIDATED

    Source sequence(s)
    AK041786, BB621429, CT030194
    Consensus CDS
    CCDS49303.1
    UniProtKB/TrEMBL
    Q8BY64, Q91W94
    Related
    ENSMUSP00000072900.7, ENSMUST00000073157.15
    Conserved Domains (3) summary
    smart00349
    Location:562
    KRAB; krueppel associated box
    COG5048
    Location:106363
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:223243
    ZF_C2H2; C2H2 Zn finger [structural motif]

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000079.7 Reference GRCm39 C57BL/6J

    Range
    67853425..67877292 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030247247.2XP_030103107.1  zinc finger protein 71, related sequence isoform X1

    Related
    ENSMUSP00000123380.3, ENSMUST00000130891.3
    Conserved Domains (3) summary
    smart00349
    Location:1572
    KRAB; krueppel associated box
    COG5048
    Location:116373
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:233253
    ZF_C2H2; C2H2 Zn finger [structural motif]
  2. XM_030247249.2XP_030103109.1  zinc finger protein 71, related sequence isoform X3

    Conserved Domains (3) summary
    smart00349
    Location:259
    KRAB; krueppel associated box
    COG5048
    Location:103360
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:220240
    ZF_C2H2; C2H2 Zn finger [structural motif]
  3. XM_030247248.2XP_030103108.1  zinc finger protein 71, related sequence isoform X2

    Conserved Domains (3) summary
    smart00349
    Location:562
    KRAB; krueppel associated box
    COG5048
    Location:106363
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:223243
    ZF_C2H2; C2H2 Zn finger [structural motif]
  4. XM_030247250.1XP_030103110.1  zinc finger protein 71, related sequence isoform X3

    Conserved Domains (3) summary
    smart00349
    Location:259
    KRAB; krueppel associated box
    COG5048
    Location:103360
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:220240
    ZF_C2H2; C2H2 Zn finger [structural motif]
  5. XM_030247252.1XP_030103112.1  zinc finger protein 71, related sequence isoform X3

    Conserved Domains (3) summary
    smart00349
    Location:259
    KRAB; krueppel associated box
    COG5048
    Location:103360
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:220240
    ZF_C2H2; C2H2 Zn finger [structural motif]
Support Center