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Banf1 BAF nuclear assembly factor 1 [ Mus musculus (house mouse) ]

Gene ID: 23825, updated on 23-Jun-2021

Summary

Official Symbol
Banf1provided by MGI
Official Full Name
BAF nuclear assembly factor 1provided by MGI
Primary source
MGI:MGI:1346330
See related
Ensembl:ENSMUSG00000024844
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Baf; Bcr; Bcrp1; L2bp1/Baf
Expression
Ubiquitous expression in CNS E11.5 (RPKM 59.0), liver E14 (RPKM 55.5) and 28 other tissues See more
Orthologs
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Genomic context

See Banf1 in Genome Data Viewer
Location:
19; 19 A
Exon count:
4
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (5414661..5416904, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (5364633..5366876, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 19 NC_000085.5 (5364640..5366645, complement)

Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene cation channel, sperm associated 1 Neighboring gene cystatin E/M Neighboring gene eukaryotic translation initiation factor 1A domain containing Neighboring gene squamous cell carcinoma antigen recognized by T cells 1 Neighboring gene RIKEN cDNA D330050I16 gene Neighboring gene testis specific 10 interacting protein

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables DNA binding IDA
Inferred from Direct Assay
more info
PubMed 
enables DNA binding TAS
Traceable Author Statement
more info
PubMed 
enables LEM domain binding ISO
Inferred from Sequence Orthology
more info
 
enables enzyme binding ISO
Inferred from Sequence Orthology
more info
 
enables identical protein binding ISO
Inferred from Sequence Orthology
more info
 
enables protein C-terminus binding ISO
Inferred from Sequence Orthology
more info
 
enables protein N-terminus binding ISO
Inferred from Sequence Orthology
more info
 
enables protein homodimerization activity ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within DNA integration IDA
Inferred from Direct Assay
more info
PubMed 
involved_in chromosome condensation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in chromosome segregation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
acts_upstream_of_or_within establishment of integrated proviral latency TAS
Traceable Author Statement
more info
PubMed 
involved_in negative regulation of viral genome replication ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
located_in chromosome IEA
Inferred from Electronic Annotation
more info
 
located_in condensed chromosome ISO
Inferred from Sequence Orthology
more info
 
located_in cytoplasm ISO
Inferred from Sequence Orthology
more info
 
located_in cytosol ISO
Inferred from Sequence Orthology
more info
 
is_active_in nucleoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
located_in nucleus ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
barrier-to-autointegration factor
Names
LAP2-binding protein 1
barrier to autointegration factor 1
breakpoint cluster region protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001038231.2NP_001033320.1  barrier-to-autointegration factor

    See identical proteins and their annotated locations for NP_001033320.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR, compared to variant 3. Variants 1-3 encode the same protein.
    Source sequence(s)
    AC122861, AK010257
    Consensus CDS
    CCDS29458.1
    UniProtKB/Swiss-Prot
    O54962
    Related
    ENSMUSP00000126202.2, ENSMUST00000170010.3
    Conserved Domains (1) summary
    pfam02961
    Location:186
    BAF; Barrier to autointegration factor
  2. NM_001286608.1NP_001273537.1  barrier-to-autointegration factor

    See identical proteins and their annotated locations for NP_001273537.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) represents the longest transcript and encodes the functional protein. Variants 1-3 encode the same protein.
    Source sequence(s)
    AC122861, AK011079, BE863097, BY111854
    Consensus CDS
    CCDS29458.1
    UniProtKB/Swiss-Prot
    O54962
    Related
    ENSMUSP00000158117.2, ENSMUST00000237167.2
    Conserved Domains (1) summary
    pfam02961
    Location:186
    BAF; Barrier to autointegration factor
  3. NM_011793.3NP_035923.1  barrier-to-autointegration factor

    See identical proteins and their annotated locations for NP_035923.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) differs in the 5' UTR, compared to variant 3. Variants 1-3 encode the same protein.
    Source sequence(s)
    AC122861, AK011079, BE863097
    Consensus CDS
    CCDS29458.1
    UniProtKB/Swiss-Prot
    O54962
    Related
    ENSMUSP00000025762.9, ENSMUST00000025762.16
    Conserved Domains (1) summary
    pfam02961
    Location:186
    BAF; Barrier to autointegration factor

RNA

  1. NR_104482.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) uses an alternate splice site in the 5'-terminal exon and lacks an internal exon, compared to variant 3. This variant is represented as non-coding because it lacks a significant portion of the coding region and does not encode a supported protein.
    Source sequence(s)
    AC122861, AK011079, BE863097
    Related
    ENSMUST00000237704.2

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000085.7 Reference GRCm39 C57BL/6J

    Range
    5414661..5416904 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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