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Fam83a family with sequence similarity 83, member A [ Mus musculus (house mouse) ]

Gene ID: 239463, updated on 23-Jun-2021

Summary

Official Symbol
Fam83aprovided by MGI
Official Full Name
family with sequence similarity 83, member Aprovided by MGI
Primary source
MGI:MGI:2447773
See related
Ensembl:ENSMUSG00000051225
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Biased expression in subcutaneous fat pad adult (RPKM 4.0), mammary gland adult (RPKM 2.7) and 11 other tissues See more
Orthologs
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Genomic context

See Fam83a in Genome Data Viewer
Location:
15; 15 D1
Exon count:
4
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (57847983..57874102)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (57984587..58010706)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 15 NC_000081.5 (57817458..57842261)

Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene TBC1 domain family, member 31 Neighboring gene uncharacterized LOC115488500 Neighboring gene nuclear encoded tRNA methionine 16 (anticodon CAT) Neighboring gene RIKEN cDNA 9130401M01 gene Neighboring gene predicted gene, 53893

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

Homology

Clone Names

  • MGC40696

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables identical protein binding ISO
Inferred from Sequence Orthology
more info
 
enables phosphatidylinositol 3-kinase regulatory subunit binding ISO
Inferred from Sequence Orthology
more info
 
enables protein kinase binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables protein kinase binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
involved_in cell population proliferation ISO
Inferred from Sequence Orthology
more info
 
involved_in epidermal growth factor receptor signaling pathway IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in epidermal growth factor receptor signaling pathway ISO
Inferred from Sequence Orthology
more info
 
involved_in signal transduction IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_173862.2NP_776287.2  protein FAM83A

    See identical proteins and their annotated locations for NP_776287.2

    Status: VALIDATED

    Source sequence(s)
    AC113292
    Consensus CDS
    CCDS27486.2
    UniProtKB/Swiss-Prot
    Q8K2P2
    Related
    ENSMUSP00000125464.2, ENSMUST00000160942.8
    Conserved Domains (2) summary
    cd09181
    Location:24298
    PLDc_FAM83A_N; N-terminal phospholipase D-like domain of the uncharacterized protein, Family with sequence similarity 83A
    pfam13091
    Location:151289
    PLDc_2; PLD-like domain

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000081.7 Reference GRCm39 C57BL/6J

    Range
    57847983..57874102
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017316599.2XP_017172088.1  protein FAM83A isoform X1

    Conserved Domains (1) summary
    cl15239
    Location:24216
    PLDc_SF; Catalytic domain of phospholipase D superfamily proteins
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