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Slc2a13 solute carrier family 2 (facilitated glucose transporter), member 13 [ Mus musculus (house mouse) ]

Gene ID: 239606, updated on 23-Jun-2021

Summary

Official Symbol
Slc2a13provided by MGI
Official Full Name
solute carrier family 2 (facilitated glucose transporter), member 13provided by MGI
Primary source
MGI:MGI:2146030
See related
Ensembl:ENSMUSG00000036298
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm308; AI505012; 6530403A04; A630029G22Rik
Expression
Broad expression in cortex adult (RPKM 10.3), frontal lobe adult (RPKM 7.6) and 15 other tissues See more
Orthologs
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Genomic context

See Slc2a13 in Genome Data Viewer
Location:
15; 15 E3
Exon count:
10
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (91151894..91457467, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (91267691..91573261, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 15 NC_000081.5 (91098122..91403692, complement)

Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene ATP-binding cassette, sub-family D (ALD), member 2 Neighboring gene cDNA sequence CN725425 Neighboring gene olfactomedin-like 2A pseudogene Neighboring gene tripartite motif-containing 59 pseudogene Neighboring gene leucine-rich repeat kinase 2 Neighboring gene RAS related protein 1b pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1) 
  • Endonuclease-mediated (1) 

Pathways from PubChem

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables ATPase binding ISO
Inferred from Sequence Orthology
more info
 
enables myo-inositol transmembrane transporter activity ISO
Inferred from Sequence Orthology
more info
 
enables myo-inositol:proton symporter activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables myo-inositol:proton symporter activity ISO
Inferred from Sequence Orthology
more info
 
enables protease binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables protease binding ISO
Inferred from Sequence Orthology
more info
 
enables transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in myo-inositol transport ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of amyloid-beta formation ISO
Inferred from Sequence Orthology
more info
 
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in astrocyte end-foot ISO
Inferred from Sequence Orthology
more info
 
located_in cell body ISO
Inferred from Sequence Orthology
more info
 
located_in cell periphery ISO
Inferred from Sequence Orthology
more info
 
located_in cell projection ISO
Inferred from Sequence Orthology
more info
 
located_in cytoplasm ISO
Inferred from Sequence Orthology
more info
 
NOT located_in early endosome IDA
Inferred from Direct Assay
more info
PubMed 
located_in growth cone ISO
Inferred from Sequence Orthology
more info
 
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
located_in integral component of plasma membrane ISO
Inferred from Sequence Orthology
more info
 
located_in intracellular membrane-bounded organelle ISO
Inferred from Sequence Orthology
more info
 
NOT located_in lysosome IDA
Inferred from Direct Assay
more info
PubMed 
located_in membrane ISO
Inferred from Sequence Orthology
more info
 
located_in organelle membrane IDA
Inferred from Direct Assay
more info
PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 
NOT located_in synaptic vesicle IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
proton myo-inositol cotransporter
Names
h(+)-myo-inositol cotransporter
h(+)-myo-inositol symporter
hmit
solute carrier family 2 member 13

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001033633.3NP_001028805.2  proton myo-inositol cotransporter

    See identical proteins and their annotated locations for NP_001028805.2

    Status: VALIDATED

    Source sequence(s)
    AK039571, AK147341, BB429800
    Consensus CDS
    CCDS27761.2
    UniProtKB/Swiss-Prot
    Q3UHK1
    Related
    ENSMUSP00000104906.2, ENSMUST00000109283.2
    Conserved Domains (2) summary
    cd06174
    Location:75580
    MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...
    pfam00083
    Location:78598
    Sugar_tr; Sugar (and other) transporter

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000081.7 Reference GRCm39 C57BL/6J

    Range
    91151894..91457467 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_004938837.1 RNA Sequence

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