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Ccdc112 coiled-coil domain containing 112 [ Mus musculus (house mouse) ]

Gene ID: 240261, updated on 5-Mar-2024

Summary

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Official Symbol
Ccdc112provided by MGI
Official Full Name
coiled-coil domain containing 112provided by MGI
Primary source
MGI:MGI:1918800
See related
Ensembl:ENSMUSG00000071855 AllianceGenome:MGI:1918800
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
8430438M01Rik
Summary
Orthologous to human CCDC112 (coiled-coil domain containing 112). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in CNS E18 (RPKM 3.5), CNS E14 (RPKM 2.8) and 11 other tissues See more
Orthologs
human all
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Genomic context

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Location:
18 C; 18 24.48 cM
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 18 NC_000084.7 (46415218..46445016, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 18 NC_000084.6 (46282151..46311950, complement)

Chromosome 18 - NC_000084.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 52364 Neighboring gene protein geranylgeranyltransferase type I, beta subunit Neighboring gene STARR-positive B cell enhancer ABC_E9977 Neighboring gene STARR-seq mESC enhancer starr_44498 Neighboring gene STARR-positive B cell enhancer ABC_E1955 Neighboring gene STARR-seq mESC enhancer starr_44499 Neighboring gene STARR-seq mESC enhancer starr_44500 Neighboring gene STARR-seq mESC enhancer starr_44501 Neighboring gene STARR-seq mESC enhancer starr_44503 Neighboring gene predicted gene 4107 Neighboring gene symplekin pseudogene Neighboring gene STARR-seq mESC enhancer starr_44504 Neighboring gene STARR-seq mESC enhancer starr_44505 Neighboring gene predicted gene, 57821

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Diversification of stem cell molecular repertoire by alternative splicing. Pritsker M, et al. Proc Natl Acad Sci U S A, 2005 Oct 4. PMID 16183747, Free PMC Article
  2. A molecular profile of a hematopoietic stem cell niche. Hackney JA, et al. Proc Natl Acad Sci U S A, 2002 Oct 1. PMID 12226475, Free PMC Article
  3. A CRISPR-based screen for Hedgehog signaling provides insights into ciliary function and ciliopathies. Breslow DK, et al. Nat Genet, 2018 Mar. PMID 29459677, Free PMC Article
  4. Cracking the egg: molecular dynamics and evolutionary aspects of the transition from the fully grown oocyte to embryo. Evsikov AV, et al. Genes Dev, 2006 Oct 1. PMID 17015433, Free PMC Article
  5. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Tanaka TS, et al. Proc Natl Acad Sci U S A, 2000 Aug 1. PMID 10922068, Free PMC Article

See all (14) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  
located_in centriolar satellite ISO
Inferred from Sequence Orthology
more info
  
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
coiled-coil domain-containing protein 112

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001160399.1 → NP_001153871.1  coiled-coil domain-containing protein 112 precursor

    See identical proteins and their annotated locations for NP_001153871.1

    Status: VALIDATED

    Source sequence(s)
    AA241279, AC124717, AC148019, AW491530, BQ831910, CJ174591, DT929545, DV656314
    Consensus CDS
    CCDS50281.1
    UniProtKB/Swiss-Prot
    A0AUP1, A0AUP2
    UniProtKB/TrEMBL
    D3Z1J2
    Related
    ENSMUSP00000072614.7, ENSMUST00000072835.7
    Conserved Domains (1) summary
    PTZ00121
    Location:339 → 479
    PTZ00121; MAEBL; Provisional

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000084.7 Reference GRCm39 C57BL/6J

    Range
    46415218..46445016 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011246924.4 → XP_011245226.1  coiled-coil domain-containing protein 112 isoform X1

    Conserved Domains (1) summary
    PTZ00121
    Location:66 → 475
    PTZ00121; MAEBL; Provisional
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A0AUP1.2 GenPept UniProtKB/Swiss-Prot:A0AUP1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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