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tofu-6 Embryonic developmental protein tofu-6 [ Caenorhabditis elegans ]

Gene ID: 24104386, updated on 24-Apr-2022

Summary

Gene symbol
tofu-6
Gene description
Embryonic developmental protein tofu-6
Primary source
WormBase:WBGene00017132
Locus tag
CELE_EEED8.1
See related
AllianceGenome:WB:WBGene00017132
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable RNA binding activity. Involved in several processes, including embryonic cleavage; mitotic sister chromatid separation; and piRNA biosynthetic process. Located in nucleus and perinuclear region of cytoplasm. Is expressed in germ line. [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

See tofu-6 in Genome Data Viewer
Location:
chromosome: II
Exon count:
7
Sequence:
Chromosome: II; NC_003280.10 (5421248..5422737)

Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene Uncharacterized protein Neighboring gene Uncharacterized protein Neighboring gene ncRNA Neighboring gene Uncharacterized protein Neighboring gene Uncharacterized protein Neighboring gene Uncharacterized protein

General gene information

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 
enables molecular_function ND
No biological Data available
more info
 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
involved_in DNA replication IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in cell cycle IEA
Inferred from Electronic Annotation
more info
 
involved_in cell division IEA
Inferred from Electronic Annotation
more info
 
involved_in cell division IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in chromosome segregation IEA
Inferred from Electronic Annotation
more info
 
involved_in embryo development ending in birth or egg hatching IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in embryonic cleavage IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in gene silencing by RNA IEA
Inferred from Electronic Annotation
more info
 
involved_in mitotic sister chromatid separation IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in piRNA biosynthetic process IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in positive regulation of cell division IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in positive regulation of chromosome segregation IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
located_in cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in nucleus IC
Inferred by Curator
more info
PubMed 
located_in nucleus IDA
Inferred from Direct Assay
more info
PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 
located_in perinuclear region of cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
located_in perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
Embryonic developmental protein tofu-6
NP_001293507.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003280.10 Reference assembly

    Range
    5421248..5422737
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001306578.5NP_001293507.1  Embryonic developmental protein tofu-6 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001293507.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q09293
    Conserved Domains (2) summary
    COG0724
    Location:17176
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd00590
    Location:1687
    RRM_SF; RNA recognition motif (RRM) superfamily