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Galnt5 polypeptide N-acetylgalactosaminyltransferase 5 [ Mus musculus (house mouse) ]

Gene ID: 241391, updated on 23-Jun-2021

Summary

Official Symbol
Galnt5provided by MGI
Official Full Name
polypeptide N-acetylgalactosaminyltransferase 5provided by MGI
Primary source
MGI:MGI:2179403
See related
Ensembl:ENSMUSG00000026828
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
4832424J23
Expression
Low expression observed in reference dataset See more
Orthologs
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Genomic context

See Galnt5 in Genome Data Viewer
Location:
2; 2 C1.1
Exon count:
11
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (57887832..57931039)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (57997850..58041027)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (57850566..57891582)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene ATP synthase membrane subunit DAPIT, mitochondrial pseudogene Neighboring gene predicted gene, 25388 Neighboring gene ermin, ERM-like protein Neighboring gene nudix (nucleoside diphosphate linked moiety X)-type motif 15 pseudogene Neighboring gene cytohesin 1 interacting protein Neighboring gene predicted gene 13546

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables polypeptide N-acetylgalactosaminyltransferase activity ISO
Inferred from Sequence Orthology
more info
 
enables transferase activity IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
is_active_in Golgi apparatus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
polypeptide N-acetylgalactosaminyltransferase 5
Names
UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 5
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5
galNAc-T5
polypeptide GalNAc transferase 5
pp-GaNTase 5
ppGaNTase-T5
protein-UDP acetylgalactosaminyltransferase 5
NP_766443.2
XP_006498111.1
XP_006498112.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_172855.3NP_766443.2  polypeptide N-acetylgalactosaminyltransferase 5

    See identical proteins and their annotated locations for NP_766443.2

    Status: VALIDATED

    Source sequence(s)
    BC116331, BC116332
    Consensus CDS
    CCDS38125.1
    UniProtKB/Swiss-Prot
    Q8C102
    UniProtKB/TrEMBL
    Q14B51
    Related
    ENSMUSP00000108235.2, ENSMUST00000112616.8
    Conserved Domains (2) summary
    cd02510
    Location:489790
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    smart00458
    Location:805925
    RICIN; Ricin-type beta-trefoil

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    57887832..57931039
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006498049.3XP_006498112.1  polypeptide N-acetylgalactosaminyltransferase 5 isoform X1

    See identical proteins and their annotated locations for XP_006498112.1

    UniProtKB/Swiss-Prot
    Q8C102
    Conserved Domains (2) summary
    cd02510
    Location:489790
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    smart00458
    Location:805925
    RICIN; Ricin-type beta-trefoil
  2. XM_006498048.5XP_006498111.1  polypeptide N-acetylgalactosaminyltransferase 5 isoform X1

    See identical proteins and their annotated locations for XP_006498111.1

    UniProtKB/Swiss-Prot
    Q8C102
    Conserved Domains (2) summary
    cd02510
    Location:489790
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    smart00458
    Location:805925
    RICIN; Ricin-type beta-trefoil
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