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Bank1 B cell scaffold protein with ankyrin repeats 1 [ Mus musculus (house mouse) ]

Gene ID: 242248, updated on 9-Oct-2021

Summary

Official Symbol
Bank1provided by MGI
Official Full Name
B cell scaffold protein with ankyrin repeats 1provided by MGI
Primary source
MGI:MGI:2442120
See related
Ensembl:ENSMUSG00000037922
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
BANK; AVIEF; AI451642; A530094C12Rik
Expression
Biased expression in spleen adult (RPKM 7.9), mammary gland adult (RPKM 2.4) and 6 other tissues See more
Orthologs
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Genomic context

See Bank1 in Genome Data Viewer
Location:
3 G3; 3 63.04 cM
Exon count:
18
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (135759124..136031902, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (136053363..136326141, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 3 NC_000069.5 (135716327..135989010, complement)

Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene predicted gene 16500 Neighboring gene eukaryotic translation initiation factor 2C, 2 pseudogene Neighboring gene heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene Neighboring gene RIKEN cDNA 1700030L20 gene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1)  1 citation
  • Endonuclease-mediated (1) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables phospholipase binding ISO
Inferred from Sequence Orthology
more info
 
enables protease binding ISO
Inferred from Sequence Orthology
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables protein tyrosine kinase binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables protein tyrosine kinase binding ISO
Inferred from Sequence Orthology
more info
 
enables signaling adaptor activity ISO
Inferred from Sequence Orthology
more info
 
enables signaling receptor binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables signaling receptor binding ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
located_in perinuclear region of cytoplasm ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
B-cell scaffold protein with ankyrin repeats
Names
B-cell scaffold protein with ankyrin repeats 1 delta 2 transcript

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001033350.3NP_001028522.2  B-cell scaffold protein with ankyrin repeats isoform 1

    See identical proteins and their annotated locations for NP_001028522.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AA175345, AA177599, AA178225, AC101978, AK041039, AK041071, AK041242, BE848854, BY107051, BY235799
    Consensus CDS
    CCDS38645.1
    UniProtKB/Swiss-Prot
    Q80VH0
    Related
    ENSMUSP00000035484.9, ENSMUST00000041577.13
    Conserved Domains (2) summary
    pfam14545
    Location:198327
    DBB; Dof, BCAP, and BANK (DBB) motif,
    cl02529
    Location:344393
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
  2. NM_001310749.1NP_001297678.1  B-cell scaffold protein with ankyrin repeats isoform 2

    See identical proteins and their annotated locations for NP_001297678.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an alternate in-frame exon in the 5' coding region compared to variant 1. The encoded isoform (2) is shorter than isoform 1.
    Source sequence(s)
    AC101978, EU051378
    Consensus CDS
    CCDS80026.1
    UniProtKB/TrEMBL
    B0F3S4
    Related
    ENSMUSP00000142366.2, ENSMUST00000196159.5
    Conserved Domains (2) summary
    pfam14545
    Location:65194
    DBB; Dof, BCAP, and BANK (DBB) motif,
    cl02529
    Location:211260
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000069.7 Reference GRCm39 C57BL/6J

    Range
    135759124..136031902 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006501483.1XP_006501546.1  B-cell scaffold protein with ankyrin repeats isoform X1

    Conserved Domains (2) summary
    pfam14545
    Location:198326
    DBB; Dof, BCAP, and BANK (DBB) motif,
    pfam18567
    Location:28153
    TIR_3; Toll/interleukin-1 receptor domain
  2. XM_006501484.5XP_006501547.1  B-cell scaffold protein with ankyrin repeats isoform X2

    Related
    ENSMUSP00000142996.2, ENSMUST00000198206.2
    Conserved Domains (1) summary
    pfam14545
    Location:65193
    DBB; Dof, BCAP, and BANK (DBB) motif,
  3. XM_006501487.2XP_006501550.1  B-cell scaffold protein with ankyrin repeats isoform X3

    Conserved Domains (2) summary
    pfam14545
    Location:198326
    DBB; Dof, BCAP, and BANK (DBB) motif,
    pfam18567
    Location:28153
    TIR_3; Toll/interleukin-1 receptor domain
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