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Leng9 leukocyte receptor cluster (LRC) member 9 [ Mus musculus (house mouse) ]

Gene ID: 243813, updated on 5-Mar-2024

Summary

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Official Symbol
Leng9provided by MGI
Official Full Name
leukocyte receptor cluster (LRC) member 9provided by MGI
Primary source
MGI:MGI:2444509
See related
Ensembl:ENSMUSG00000043432 AllianceGenome:MGI:2444509
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
9530024C23Rik; F630035L11Rik
Summary
Predicted to enable metal ion binding activity. Is expressed in several structures, including cranial ganglion; early conceptus; oocyte; telencephalon; and vibrissa. Orthologous to human LENG9 (leukocyte receptor cluster member 9). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human all
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Genomic context

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Location:
7 A1; 7 2.39 cM
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (4151182..4152871, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (4148183..4149872, complement)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene tweety family member 1 Neighboring gene RIKEN cDNA D030047H15 gene Neighboring gene leukocyte receptor cluster (LRC) member 8 Neighboring gene STARR-positive B cell enhancer ABC_E8149 Neighboring gene STARR-seq mESC enhancer starr_17920 Neighboring gene CDC42 effector protein 5 Neighboring gene calcium binding protein 39 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome-wide survey and expression profiling of CCCH-zinc finger family reveals a functional module in macrophage activation. Liang J, et al. PLoS One, 2008 Aug 6. PMID 18682727, Free PMC Article
  2. Loss of Fam60a, a Sin3a subunit, results in embryonic lethality and is associated with aberrant methylation at a subset of gene promoters. Nabeshima R, et al. Elife, 2018 Aug 2. PMID 30070635, Free PMC Article
  3. Resolution of cell fate decisions revealed by single-cell gene expression analysis from zygote to blastocyst. Guo G, et al. Dev Cell, 2010 Apr 20. PMID 20412781
  4. Mouse brain organization revealed through direct genome-scale TF expression analysis. Gray PA, et al. Science, 2004 Dec 24. PMID 15618518
  5. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548

See all (14) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
leukocyte receptor cluster member 9

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_175529.3 → NP_780738.1  leukocyte receptor cluster member 9

    See identical proteins and their annotated locations for NP_780738.1

    Status: PROVISIONAL

    Source sequence(s)
    AK089196
    Consensus CDS
    CCDS20732.1
    UniProtKB/Swiss-Prot
    Q3UYM5, Q8BTG8, Q8BTN6
    Related
    ENSMUSP00000061079.7, ENSMUST00000058358.8
    Conserved Domains (3) summary
    smart00356
    Location:11 → 33
    ZnF_C3H1; zinc finger
    pfam04457
    Location:77 → 128
    DUF504; Protein of unknown function (DUF504)
    pfam10469
    Location:305 → 484
    AKAP7_NLS; AKAP7 2'5' RNA ligase-like domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    4151182..4152871 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8BTN6.1 GenPept UniProtKB/Swiss-Prot:Q8BTN6

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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