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Nfkbid nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta [ Mus musculus (house mouse) ]

Gene ID: 243910, updated on 23-Jun-2021

Summary

Official Symbol
Nfkbidprovided by MGI
Official Full Name
nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, deltaprovided by MGI
Primary source
MGI:MGI:3041243
See related
Ensembl:ENSMUSG00000036931
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Ik; IkappaBNS; ikB-delta; I-kappa-B-delta
Expression
Biased expression in spleen adult (RPKM 15.9), thymus adult (RPKM 12.6) and 13 other tissues See more
Orthologs
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Genomic context

See Nfkbid in Genome Data Viewer
Location:
7; 7 B1
Exon count:
12
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (30121156..30128173)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (30421731..30428749)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (31208323..31213765)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene TYRO protein tyrosine kinase binding protein Neighboring gene hematopoietic cell signal transducer Neighboring gene predicted gene, 30646 Neighboring gene amyloid beta (A4) precursor-like protein 1

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

Homology

Clone Names

  • MGC130396

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001360906.1NP_001347835.1  NF-kappa-B inhibitor delta

    Status: VALIDATED

    Source sequence(s)
    AC149067
    Consensus CDS
    CCDS21091.1
    Conserved Domains (3) summary
    PHA03095
    Location:60301
    PHA03095; ankyrin-like protein; Provisional
    sd00045
    Location:6296
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:200292
    Ank_2; Ankyrin repeats (3 copies)
  2. NM_001360907.1NP_001347836.1  NF-kappa-B inhibitor delta

    Status: VALIDATED

    Source sequence(s)
    AC149067, AK167356
    Consensus CDS
    CCDS21091.1
    Related
    ENSMUSP00000103810.2, ENSMUST00000108175.8
    Conserved Domains (3) summary
    PHA03095
    Location:60301
    PHA03095; ankyrin-like protein; Provisional
    sd00045
    Location:6296
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:200292
    Ank_2; Ankyrin repeats (3 copies)
  3. NM_172142.4NP_742154.1  NF-kappa-B inhibitor delta

    See identical proteins and their annotated locations for NP_742154.1

    Status: VALIDATED

    Source sequence(s)
    AC149067, AY078069
    Consensus CDS
    CCDS21091.1
    UniProtKB/Swiss-Prot
    Q2TB02
    Related
    ENSMUSP00000042317.9, ENSMUST00000046177.9
    Conserved Domains (3) summary
    PHA03095
    Location:60301
    PHA03095; ankyrin-like protein; Provisional
    sd00045
    Location:6296
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:200292
    Ank_2; Ankyrin repeats (3 copies)

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    30121156..30128173
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030242570.2XP_030098430.1  NF-kappa-B inhibitor delta isoform X1

    Conserved Domains (3) summary
    PHA03095
    Location:60301
    PHA03095; ankyrin-like protein; Provisional
    sd00045
    Location:6296
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:200292
    Ank_2; Ankyrin repeats (3 copies)

RNA

  1. XR_004934098.1 RNA Sequence

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