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Plbd2 phospholipase B domain containing 2 [ Rattus norvegicus (Norway rat) ]

Gene ID: 246120, updated on 2-Oct-2021

Summary

Official Symbol
Plbd2provided by RGD
Official Full Name
phospholipase B domain containing 2provided by RGD
Primary source
RGD:708461
See related
EnsemblRapid:ENSRNOG00000001385
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
P76
Summary
human homolog is a nucleolar RNA-binding protein [RGD, Feb 2006]
Expression
Biased expression in Kidney (RPKM 242.2), Liver (RPKM 201.4) and 9 other tissues See more
Orthologs
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Genomic context

See Plbd2 in Genome Data Viewer
Location:
12q16
Exon count:
12
Annotation release Status Assembly Chr Location
108 current mRatBN7.2 (GCF_015227675.2) 12 NC_051347.1 (36062802..36081984)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 12 NC_005111.4 (41600005..41619779)

Chromosome 12 - NC_051347.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120095848 Neighboring gene two pore segment channel 1 Neighboring gene solute carrier family 8 member B1 Neighboring gene serine dehydratase Neighboring gene serine dehydratase-like

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General gene information

Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables phospholipase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
involved_in phospholipid catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
is_active_in extracellular region IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in lysosomal lumen IEA
Inferred from Electronic Annotation
more info
 
located_in lysosome ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
putative phospholipase B-like 2
Names
LAMA-like protein 2
RDCR-0918-3 protein
lamina ancestor homolog 2
mannose-6-phosphate protein p76
phospholipase B domain-containing protein 2
NP_640348.2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_139255.3NP_640348.2  putative phospholipase B-like 2 precursor

    See identical proteins and their annotated locations for NP_640348.2

    Status: VALIDATED

    Source sequence(s)
    BC126078, DN935663, DY309487
    UniProtKB/Swiss-Prot
    Q4QQW8
    Related
    ENSRNOP00000001872.5, ENSRNOT00000001872.6
    Conserved Domains (1) summary
    pfam04916
    Location:77580
    Phospholip_B; Phospholipase B

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mRatBN7.2 Primary Assembly

Genomic

  1. NC_051347.1 Reference mRatBN7.2 Primary Assembly

    Range
    36062802..36081984
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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