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roh reduction of Rh1 [ Drosophila melanogaster (fruit fly) ]

Gene ID: 246602, updated on 27-Mar-2024

Summary

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Official Symbol
rohprovided by FlyBase
Official Full Name
reduction of Rh1provided by FlyBase
Primary source
FLYBASE:FBgn0250838
Locus tag
Dmel_CG30415
See related
AllianceGenome:FB:FBgn0250838
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
anon-SAGE:Wang-079; CG30415; CG3487; Dmel\CG30415
Summary
Involved in rhodopsin biosynthetic process. Is expressed in adult head and adult heart. Used to study retinal degeneration. [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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Location:
59D9-59D9; 2-102 cM
Exon count:
3
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2R NT_033778.4 (23385464..23386463, complement)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2R NT_033778.3 (19272987..19273986, complement)

Chromosome 2R - NT_033778.4Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene yellow-d2 Neighboring gene long non-coding RNA:CR44784 Neighboring gene uncharacterized protein Neighboring gene eukaryotic translation initiation factor 2B subunit delta Neighboring gene Myotubularin related protein 6 Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Developmental regulation of canonical and small ORF translation from mRNAs. Patraquim P, et al. Genome Biol, 2020 May 29. PMID 32471506, Free PMC Article
  2. Genetic screen for regulators of lymph gland homeostasis and hemocyte maturation in Drosophila. Tan KL, et al. G3 (Bethesda), 2012 Mar. PMID 22413093, Free PMC Article
  3. A Fluorescence-Based Genetic Screen to Study Retinal Degeneration in Drosophila. Huang Y, et al. PLoS One, 2015. PMID 26659849, Free PMC Article
  4. Hundreds of putatively functional small open reading frames in Drosophila. Ladoukakis E, et al. Genome Biol, 2011 Nov 25. PMID 22118156, Free PMC Article
  5. The bHLH Transcription Factor Hand Regulates the Expression of Genes Critical to Heart and Muscle Function in Drosophila melanogaster. Hallier B, et al. PLoS One, 2015. PMID 26252215, Free PMC Article

See all (31) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by FlyBase

Process Evidence Code Pubs
involved_in rhodopsin biosynthetic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 

General protein information

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Preferred Names
reduction of Rh1
Names
CG30415-PA
CG30415-PB
anon-SAGE:Wang-079
reduction of rh1
roh-PA
roh-PB

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033778.4 Reference assembly

    Range
    23385464..23386463 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_166600.3 → NP_726319.1  reduction of Rh1, isoform B [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_726319.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q0E8X7
    Related
    FBpp0071940

  2. NM_166599.3 → NP_726318.1  reduction of Rh1, isoform A [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_726318.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q0E8X7
    Related
    FBpp0071939
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q0E8X7 Q0E8X7

Gene LinkOut

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