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trmB HTH-type sugar-sensing transcriptional regulator TrmB [ Palaeococcus pacificus DY20341 ]

Gene ID: 24842147, updated on 19-Dec-2022

Summary

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Gene symbol
trmB
Gene description
HTH-type sugar-sensing transcriptional regulator TrmB
Locus tag
PAP_RS05065
Gene type
protein coding
Organism
Palaeococcus pacificus DY20341 (strain: DY20341, culture-collection: DSM:24777, culture-collection: JCM:17873, type-material: type strain of Palaeococcus pacificus)
Lineage
Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Palaeococcus
Old locus tag
PAP_05115
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Genomic context

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NZ_CP006019.1Genomic Context describing neighboring genes Neighboring gene L-fucose/L-arabinose isomerase family protein Neighboring gene ABC transporter ATP-binding protein Neighboring gene trehalose synthase Neighboring gene carbohydrate ABC transporter permease

Genomic regions, transcripts, and products

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Genomic Sequence:
NZ_CP006019.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Differential signal transduction via TrmB, a sugar sensing transcriptional repressor of Pyrococcus furiosus. Lee SJ, et al. Mol Microbiol, 2007 Jun. PMID 17504272
  2. TrmB, a sugar sensing regulator of ABC transporter genes in Pyrococcus furiosus exhibits dual promoter specificity and is controlled by different inducers. Lee SJ, et al. Mol Microbiol, 2005 Sep. PMID 16135241
  3. Complete Genome Sequence of Hyperthermophilic Piezophilic Archaeon Palaeococcus pacificus DY20341T, Isolated from Deep-Sea Hydrothermal Sediments. Zeng X, et al. Genome Announc, 2015 Sep 17. PMID 26383653, Free PMC Article
  4. TrmB, a sugar-specific transcriptional regulator of the trehalose/maltose ABC transporter from the hyperthermophilic archaeon Thermococcus litoralis. Lee SJ, et al. J Biol Chem, 2003 Jan 10. PMID 12426307

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
HTH-type sugar-sensing transcriptional regulator TrmB

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NZ_CP006019.1 Reference assembly

    Range
    908422..909438 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_048164992.1 HTH-type sugar-sensing transcriptional regulator TrmB [Palaeococcus pacificus]

    See identical proteins and their annotated locations for WP_048164992.1

    UniProtKB/TrEMBL
    A0A075LSZ4
    Conserved Domains (3) summary
    COG1378
    Location:3 → 243
    TrmB; Sugar-specific transcriptional regulator TrmB [Transcription]
    pfam01978
    Location:11 → 78
    TrmB; Sugar-specific transcriptional regulator TrmB
    cl15239
    Location:110 → 335
    PLDc_SF; Catalytic domain of phospholipase D superfamily proteins
Nucleotide Protein
Heading Accession and Version

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