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SPOG_01517 CGI-48 family protein [ Schizosaccharomyces cryophilus OY26 ]

Gene ID: 25035845, updated on 30-Dec-2023

Summary

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Gene symbol
SPOG_01517
Gene description
CGI-48 family protein
Locus tag
SPOG_01517
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces cryophilus OY26 (strain: OY26, type-material: culture from type material of Schizosaccharomyces cryophilus)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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Location:
chromosome: Unknown
Exon count:
1

NW_013185631.1Genomic Context describing neighboring genes Neighboring gene F1-ATPase subunit H Neighboring gene AAA family ATPase Gcn20 Neighboring gene elongin-A Neighboring gene U2 snRNP-associated protein Sf3b14 Neighboring gene Swr1 complex subunit Vps71 Neighboring gene 60S ribosomal protein L7a Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_013185631.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative functional genomics of the fission yeasts. Rhind N, et al. Science, 2011 May 20. PMID 21511999, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in rRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Pwp2p-containing subcomplex of 90S preribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of small-subunit processome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CGI-48 family protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_013185631.1 Reference assembly

    Range
    443391..445391 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013170204.1 → XP_013025658.1  CGI-48 family protein [Schizosaccharomyces cryophilus OY26]

    See identical proteins and their annotated locations for XP_013025658.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    S9VTX9
    Conserved Domains (3) summary
    COG2319
    Location:253 → 551
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:256 → 294
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:253 → 549
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein
Heading Accession and Version

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