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Odf4 outer dense fiber of sperm tails 4 [ Mus musculus (house mouse) ]

Gene ID: 252868, updated on 2-Oct-2021

Summary

Official Symbol
Odf4provided by MGI
Official Full Name
outer dense fiber of sperm tails 4provided by MGI
Primary source
MGI:MGI:2182079
See related
Ensembl:ENSMUSG00000032921
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Oppo1
Expression
Restricted expression toward testis adult (RPKM 131.5) See more
Orthologs
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Genomic context

See Odf4 in Genome Data Viewer
Location:
11; 11 B3
Exon count:
5
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (68812661..68817907, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (68921835..68927081, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 11 NC_000077.5 (68735337..68740583, complement)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene ribosomal protein L26 Neighboring gene predicted gene, 22608 Neighboring gene Rho guanine nucleotide exchange factor (GEF) 15 Neighboring gene predicted gene, 51902 Neighboring gene predicted gene, 32273

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 

General gene information

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
acts_upstream_of_or_within cell differentiation IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within multicellular organism development IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within spermatogenesis IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
located_in motile cilium IDA
Inferred from Direct Assay
more info
PubMed 
located_in outer dense fiber IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
outer dense fiber protein 4
Names
outer dense fiber of sperm tails protein 4
testis-specific protein oppo 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_145746.2NP_665689.1  outer dense fiber protein 4

    See identical proteins and their annotated locations for NP_665689.1

    Status: VALIDATED

    Source sequence(s)
    AB074438, BC060992, BU961575
    Consensus CDS
    CCDS24872.1
    UniProtKB/Swiss-Prot
    Q8VI88
    Related
    ENSMUSP00000040050.8, ENSMUST00000038932.14
    Conserved Domains (1) summary
    cl21598
    Location:51221
    PMP22_Claudin; PMP-22/EMP/MP20/Claudin family

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    68812661..68817907 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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