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rhp16 ATP-dependent helicase [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2538860, updated on 22-Jun-2024

Summary

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Gene symbol
rhp16
Gene description
ATP-dependent helicase
Locus tag
SPOM_SPCC330.01C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
Also known as
rad16; SPCC613.13c
Old locus tag
SPCC330.01c
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Genomic context

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See rhp16 in Genome Data Viewer
Location:
chromosome: III
Exon count:
1
Sequence:
Chromosome: III; NC_003421.2 (102424..106710, complement)

Chromosome III - NC_003421.2Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene protein meu23 Neighboring gene CLRC ubiquitin ligase complex WD repeat subunit Raf1/Dos1 Neighboring gene ncRNA Neighboring gene DNA repair protein Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003421.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Cloning of Schizosaccharomyces pombe rph16+, a gene homologous to the Saccharomyces cerevisiae RAD16 gene. Bang DD, et al. Mutat Res, 1996 Oct 18. PMID 8879272
  2. The genetic control of spontaneous and UV-induced mitotic intrachromosomal recombination in the fission yeast Schizosaccharomyces pombe. Osman F, et al. Curr Genet, 2000 Oct. PMID 11057444
  3. Characterization of the rhp7(+) and rhp16(+) genes in Schizosaccharomyces pombe. Lombaerts M, et al. Nucleic Acids Res, 1999 Sep 1. PMID 10446227, Free PMC Article
  4. Chromosome fusions following telomere loss are mediated by single-strand annealing. Wang X, et al. Mol Cell, 2008 Aug 22. PMID 18722173
  5. A new Schizosaccharomyces pombe base excision repair mutant, nth1, reveals overlapping pathways for repair of DNA base damage. Osman F, et al. Mol Microbiol, 2003 Apr. PMID 12675805

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables ATP binding ISM
Inferred from Sequence Model
more info
  
enables ATP hydrolysis activity IC
Inferred by Curator
more info
  
enables ATP-dependent activity, acting on DNA IBA
Inferred from Biological aspect of Ancestor
more info
  
enables ATP-dependent chromatin remodeler activity NAS
Non-traceable Author Statement
more info
  
enables DNA binding IC
Inferred by Curator
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables ubiquitin protein ligase activity ISM
Inferred from Sequence Model
more info
  
enables zinc ion binding ISM
Inferred from Sequence Model
more info
  
Process Evidence Code Pubs
involved_in nucleotide-excision repair IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in nucleotide-excision repair IGI
Inferred from Genetic Interaction
more info
 PubMed 
involved_in pyrimidine dimer repair by nucleotide-excision repair IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
part_of nucleotide-excision repair complex IPI
Inferred from Physical Interaction
more info
 PubMed 
is_active_in nucleus HDA PubMed 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
ATP-dependent helicase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003421.2 Reference assembly

    Range
    102424..106710 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001022696.3 → NP_587701.1  ATP-dependent helicase [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_587701.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O74911, P79051, Q9UU12, Q9UU98
    Conserved Domains (4) summary
    smart00184
    Location:711 → 753
    RING; Ring finger
    COG0553
    Location:27 → 962
    HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
    cd00046
    Location:378 → 526
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    pfam00271
    Location:791 → 907
    Helicase_C; Helicase conserved C-terminal domain
Nucleotide Protein
Heading Accession and Version

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