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fkbp39 putative FKBP-type peptidyl-prolyl cis-trans isomerase [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2539812, updated on 11-Apr-2024

Summary

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Gene symbol
fkbp39
Gene description
putative FKBP-type peptidyl-prolyl cis-trans isomerase
Primary source
PomBase:SPBC1347.02
Locus tag
SPBC1347.02
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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See fkbp39 in Genome Data Viewer
Location:
chromosome: II
Exon count:
1
Sequence:
Chromosome: II; NC_003423.3 (4064502..4065960)

Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene COPII-coated vesicle component Sec13 Neighboring gene miscRNA Neighboring gene putative deoxycytidyl transferase Rev1 Neighboring gene miscRNA Neighboring gene sporulation protein Meu14 Neighboring gene miscRNA Neighboring gene putative TIM22 inner membrane protein import complex subunit Tim54

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003423.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Prolyl isomerization of the CENP-A N-terminus regulates centromeric integrity in fission yeast. Tan HL, et al. Nucleic Acids Res, 2018 Feb 16. PMID 29194511, Free PMC Article
  2. The SH3 domains of two PCH family members cooperate in assembly of the Schizosaccharomyces pombe contractile ring. Roberts-Galbraith RH, et al. J Cell Biol, 2009 Jan 12. PMID 19139265, Free PMC Article
  3. Comprehensive proteomics analysis reveals new substrates and regulators of the fission yeast clp1/cdc14 phosphatase. Chen JS, et al. Mol Cell Proteomics, 2013 May. PMID 23297348, Free PMC Article
  4. Large scale screening of genetic interaction with sgf73(+) in fission yeast. Guo Y, et al. Yi Chuan, 2014 Jul. PMID 25076038
  5. Predicting the fission yeast protein interaction network. Pancaldi V, et al. G3 (Bethesda), 2012 Apr. PMID 22540037, Free PMC Article

See all (15) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables RNA binding EXP
Inferred from Experiment
more info
 PubMed 
enables histone chaperone activity ISO
Inferred from Sequence Orthology
more info
  
enables molecular condensate scaffold activity EXP
Inferred from Experiment
more info
 PubMed 
enables nucleosome binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables peptidyl-prolyl cis-trans isomerase activity EXP
Inferred from Experiment
more info
 PubMed 
enables peptidyl-prolyl cis-trans isomerase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables rDNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
involved_in CENP-A containing chromatin assembly IMP
Inferred from Mutant Phenotype
more info
 PubMed 
NOT involved_in nucleolar large rRNA transcription by RNA polymerase I IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in ribosomal large subunit biogenesis IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in ribosomal small subunit biogenesis IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
part_of chromatin IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in nucleolar chromatin IDA
Inferred from Direct Assay
more info
 PubMed 
part_of nucleolar preribosome IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in nucleolus HDA PubMed 
is_active_in nucleolus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
putative FKBP-type peptidyl-prolyl cis-trans isomerase
NP_596694.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003423.3 Reference assembly

    Range
    4064502..4065960
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001022618.2 → NP_596694.1  putative FKBP-type peptidyl-prolyl cis-trans isomerase [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_596694.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O74191, Q9UTU5
    Conserved Domains (2) summary
    COG0545
    Location:201 → 361
    FkpA; FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
    pfam00254
    Location:272 → 358
    FKBP_C; FKBP-type peptidyl-prolyl cis-trans isomerase
Nucleotide Protein
Heading Accession and Version

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