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SPBC1539.07c putative glutathione-dependent formaldehyde dehydrogenase [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2540073, updated on 11-Apr-2024

Summary

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Gene symbol
SPBC1539.07c
Gene description
putative glutathione-dependent formaldehyde dehydrogenase
Primary source
PomBase:SPBC1539.07c
Locus tag
SPBC1539.07c
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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Location:
chromosome: II
Exon count:
3
Sequence:
Chromosome: II; NC_003423.3 (4373541..4375131, complement)

Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene putative COG complex subunit Cog3 Neighboring gene putative acyl-coenzyme A binding protein Neighboring gene ADP-ribosylation factor-like protein Arf6 Neighboring gene putative anthranilate synthase component II

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003423.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Hierarchical modularity and the evolution of genetic interactomes across species. Ryan CJ, et al. Mol Cell, 2012 Jun 8. PMID 22681890, Free PMC Article
  2. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372
  3. The genome sequence of Schizosaccharomyces pombe. Wood V, et al. Nature, 2002 Feb 21. PMID 11859360
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables S-(hydroxymethyl)glutathione dehydrogenase (NAD(P)+) activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables S-(hydroxymethyl)glutathione dehydrogenase (NAD+) activity IEA
Inferred from Electronic Annotation
more info
  
enables S-(hydroxymethyl)glutathione dehydrogenase (NADP+) activity IEA
Inferred from Electronic Annotation
more info
  
enables alcohol dehydrogenase (NAD+) activity, zinc-dependent IBA
Inferred from Biological aspect of Ancestor
more info
  
enables zinc ion binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in formaldehyde catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cytosol HDA PubMed 
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in mitochondrion ISO
Inferred from Sequence Orthology
more info
  
is_active_in nucleus HDA PubMed 

General protein information

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Preferred Names
putative glutathione-dependent formaldehyde dehydrogenase
NP_596821.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003423.3 Reference assembly

    Range
    4373541..4375131 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001023841.2 → NP_596821.1  putative glutathione-dependent formaldehyde dehydrogenase [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_596821.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    P78870, Q9UUF6
    Conserved Domains (2) summary
    cd08300
    Location:8 → 374
    alcohol_DH_class_III; class III alcohol dehydrogenases
    COG1062
    Location:8 → 375
    FrmA; Zn-dependent alcohol dehydrogenase [General function prediction only]
Nucleotide Protein
Heading Accession and Version

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