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clr4 histone H3 methyltransferase Clr4 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2540825, updated on 22-Sep-2022

Summary

Gene symbol
clr4
Gene description
histone H3 methyltransferase Clr4
Locus tag
SPBC428.08c
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

See clr4 in Genome Data Viewer
Location:
chromosome: II
Exon count:
1
Sequence:
Chromosome: II; NC_003423.3 (453996..458487, complement)

Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene putative nuclear membrane organization protein Apq12 Neighboring gene miscRNA Neighboring gene putative argininosuccinate synthase Neighboring gene histone deacetylase complex subunit Rxt2 Neighboring gene meiotic chromosome segregation protein Meu6 Neighboring gene miscRNA Neighboring gene miscRNA Neighboring gene miscRNA Neighboring gene uncharacterized protein

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables double-stranded DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables double-stranded DNA binding IDA
Inferred from Direct Assay
more info
PubMed 
enables histone H3K9 methyltransferase activity EXP
Inferred from Experiment
more info
PubMed 
enables histone H3K9 methyltransferase activity IDA
Inferred from Direct Assay
more info
PubMed 
enables histone H3K9 methyltransferase activity IMP
Inferred from Mutant Phenotype
more info
PubMed 
enables histone methyltransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables histone reader activity EXP
Inferred from Experiment
more info
PubMed 
enables methyltransferase activity IDA
Inferred from Direct Assay
more info
PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables single-stranded DNA binding IDA
Inferred from Direct Assay
more info
PubMed 
enables single-stranded RNA binding IDA
Inferred from Direct Assay
more info
PubMed 
enables ubiquitin binding EXP
Inferred from Experiment
more info
PubMed 
enables ubiquitin modification-dependent histone binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
histone H3 methyltransferase Clr4

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003423.3 Reference assembly

    Range
    453996..458487 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001021094.2NP_595186.1  histone H3 methyltransferase Clr4 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_595186.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O60016, O74565
    Conserved Domains (5) summary
    smart00468
    Location:209312
    PreSET; N-terminal to some SET domains
    smart00298
    Location:762
    CHROMO; Chromatin organization modifier domain
    smart00317
    Location:329451
    SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
    smart00508
    Location:474489
    PostSET; Cysteine-rich motif following a subset of SET domains
    COG2940
    Location:1489
    SET; SET domain-containing protein (function unknown) [General function prediction only]