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swi6 chromodomain protein Swi6 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2541633, updated on 22-Sep-2022

Summary

Gene symbol
swi6
Gene description
chromodomain protein Swi6
Locus tag
SPAC664.01c
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
Also known as
SPAC824.10c
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Genomic context

See swi6 in Genome Data Viewer
Location:
chromosome: I
Exon count:
1
Sequence:
Chromosome: I; NC_003424.3 (1702406..1704073, complement)

Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene guanosine-diphosphatase Gda1 Neighboring gene putative GTPase-activating protein Neighboring gene miscRNA Neighboring gene tRNA-Lys Neighboring gene actin-like protein Arp8

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables RNA binding IDA
Inferred from Direct Assay
more info
PubMed 
enables chromatin binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables chromatin-protein adaptor activity IPI
Inferred from Physical Interaction
more info
PubMed 
enables histone binding IDA
Inferred from Direct Assay
more info
PubMed 
enables histone binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables histone reader activity IDA
Inferred from Direct Assay
more info
PubMed 
enables identical protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables methylated histone binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
is_active_in chromatin IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in chromosome, subtelomeric region IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in condensed chromosome, centromeric region IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in heterochromatin IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in heterochromatin island IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in mating-type region heterochromatin IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in nucleus IEA
Inferred from Electronic Annotation
more info
 
is_active_in pericentric heterochromatin IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
is_active_in pericentric heterochromatin IDA
Inferred from Direct Assay
more info
PubMed 

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003424.3 Reference assembly

    Range
    1702406..1704073 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001018882.2NP_593449.1  chromodomain protein Swi6 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_593449.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    P40381
    Conserved Domains (2) summary
    smart00300
    Location:261326
    ChSh; Chromo Shadow Domain
    cd00024
    Location:85134
    CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ...