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SPAC1039.07c aminotransferase [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2542926, updated on 11-Apr-2024

Summary

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Gene symbol
SPAC1039.07c
Gene description
aminotransferase
Primary source
PomBase:SPAC1039.07c
Locus tag
SPAC1039.07c
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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Location:
chromosome: I
Exon count:
1
Sequence:
Chromosome: I; NC_003424.3 (5462118..5463989, complement)

Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene putative nicotinic acid plasma membrane transporter Neighboring gene zinc finger protein Klf1 Neighboring gene miscRNA Neighboring gene miscRNA Neighboring gene putative alanine racemase Neighboring gene miscRNA Neighboring gene miscRNA Neighboring gene putative serine acetyltransferase Neighboring gene miscRNA Neighboring gene amino acid permease Isp5 Neighboring gene putative alpha-glucosidase Neighboring gene putative Pmf1-like isoleucine synthesis protein mmf2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003424.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372
  2. The genome sequence of Schizosaccharomyces pombe. Wood V, et al. Nature, 2002 Feb 21. PMID 11859360

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables alanine-glyoxylate transaminase activity IEA
Inferred from Electronic Annotation
more info
  
enables pyridoxal phosphate binding ISM
Inferred from Sequence Model
more info
  
Process Evidence Code Pubs
involved_in L-alanine catabolic process, by transamination IEA
Inferred from Electronic Annotation
more info
  
involved_in glyoxylate catabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in cytosol HDA PubMed 
is_active_in mitochondrion HDA PubMed 

General protein information

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Preferred Names
aminotransferase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003424.3 Reference assembly

    Range
    5462118..5463989 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001020429.2 → NP_594998.1  aminotransferase [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_594998.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q9US34
    Conserved Domains (2) summary
    cd00610
    Location:17 → 437
    OAT_like; Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, ...
    COG0160
    Location:11 → 438
    GabT; 4-aminobutyrate aminotransferase or related aminotransferase [Amino acid transport and metabolism]
Nucleotide Protein
Heading Accession and Version

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