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Hrh2 histamine receptor H 2 [ Rattus norvegicus (Norway rat) ]

Gene ID: 25461, updated on 13-Apr-2024

Summary

Official Symbol
Hrh2provided by RGD
Official Full Name
histamine receptor H 2provided by RGD
Primary source
RGD:2831
See related
Ensembl:ENSRNOG00000018260 AllianceGenome:RGD:2831
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
H2R; HH2R
Summary
Enables heterocyclic compound binding activity and histamine receptor activity. Involved in cellular response to histamine and negative regulation of arachidonic acid secretion. Located in membrane. Biomarker of transient cerebral ischemia. Orthologous to human HRH2 (histamine receptor H2). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Brain (RPKM 17.7), Spleen (RPKM 8.2) and 7 other tissues See more
Orthologs
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Genomic context

Location:
17p14
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 17 NC_086035.1 (10371083..10412979, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 17 NC_051352.1 (10366004..10407791, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 17 NC_005116.4 (10912959..10931389, complement)

Chromosome 17 - NC_086035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120097924 Neighboring gene long non-coding RNA 012 Neighboring gene uncharacterized LOC134482680 Neighboring gene complexin 2 Neighboring gene ribosomal protein lateral stalk subunit P0, pseudogene 1 Neighboring gene ribosomal protein L35A like 5

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Pathways from PubChem

General gene information

Markers

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables G protein-coupled serotonin receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables heterocyclic compound binding IDA
Inferred from Direct Assay
more info
PubMed 
enables histamine receptor activity IDA
Inferred from Direct Assay
more info
PubMed 
enables histamine receptor activity IEA
Inferred from Electronic Annotation
more info
 
enables neurotransmitter receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
 
Process Evidence Code Pubs
involved_in G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in G protein-coupled serotonin receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 
involved_in cellular response to histamine IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in chemical synaptic transmission IBA
Inferred from Biological aspect of Ancestor
more info
 
acts_upstream_of_or_within digestive tract development ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within epithelial cell morphogenesis ISO
Inferred from Sequence Orthology
more info
 
involved_in gastric acid secretion IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within gastric acid secretion ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within gastrin-induced gastric acid secretion ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within gland development ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within histamine-induced gastric acid secretion ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within memory ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of arachidonic acid secretion IDA
Inferred from Direct Assay
more info
PubMed 
involved_in positive regulation of vasoconstriction IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within regulation of synaptic plasticity ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within visual learning ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
is_active_in dendrite IBA
Inferred from Biological aspect of Ancestor
more info
 
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 
located_in synapse IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
histamine H2 receptor
Names
gastric receptor I

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001413011.1NP_001399940.1  histamine H2 receptor

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000017

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086035.1 Reference GRCr8

    Range
    10371083..10412979 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063276079.1XP_063132149.1  histamine H2 receptor isoform X1

RNA

  1. XR_596619.4 RNA Sequence

  2. XR_005495238.2 RNA Sequence