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mt-Cytb cytochrome b, mitochondrial [ Rattus norvegicus (Norway rat) ]

Gene ID: 26192, updated on 22-Aug-2021

Summary

Official Symbol
mt-Cytbprovided by RGD
Official Full Name
cytochrome b, mitochondrialprovided by RGD
Primary source
RGD:620081
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus (strain: BN/SsNHsdMCW)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
CYTB
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Genomic context

See mt-Cytb in Genome Data Viewer
Annotation release Status Assembly Chr Location
108 current mRatBN7.2 (GCF_015227675.2) MT (non-nuclear) NC_001665.2 (14136..15278)
106 previous assembly Rnor_6.0 (GCF_000001895.5) MT (non-nuclear) NC_001665.2 (14136..15278)

Chromosome MT - NC_001665.2Genomic Context describing neighboring genes Neighboring gene NADH dehydrogenase subunit 5 Neighboring gene NADH dehydrogenase subunit 6 Neighboring gene tRNA Neighboring gene tRNA Neighboring gene tRNA

Genomic regions, transcripts, and products

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

  • Homologs of the CYTB gene: The CYTB gene is conserved in human, chimpanzee, dog, cow, mouse, chicken, zebrafish, fruit fly, mosquito, S.cerevisiae, K.lactis, E.gossypii, S.pombe, A.thaliana, and frog.
  • Orthologs

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables protein-containing complex binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables ubiquinol-cytochrome-c reductase activity IEA
Inferred from Electronic Annotation
more info
 
enables ubiquinol-cytochrome-c reductase activity ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
involved_in animal organ regeneration IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in electron transport coupled proton transport IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in hyperosmotic salinity response IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in mitochondrial electron transport, ubiquinol to cytochrome c IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in mitochondrial electron transport, ubiquinol to cytochrome c ISO
Inferred from Sequence Orthology
more info
 
involved_in respiratory electron transport chain IEA
Inferred from Electronic Annotation
more info
 
involved_in response to cadmium ion IDA
Inferred from Direct Assay
more info
PubMed 
involved_in response to calcium ion IDA
Inferred from Direct Assay
more info
PubMed 
involved_in response to cobalamin IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in response to copper ion IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in response to ethanol IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in response to glucagon IDA
Inferred from Direct Assay
more info
PubMed 
involved_in response to heat IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in response to hormone IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in response to hyperoxia IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in response to hypoxia IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in response to mercury ion IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in response to nutrient IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in response to organic cyclic compound IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in response to organonitrogen compound IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in response to toxic substance IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in response to xenobiotic stimulus IEP
Inferred from Expression Pattern
more info
PubMed 
Component Evidence Code Pubs
located_in integral component of mitochondrial inner membrane IDA
Inferred from Direct Assay
more info
PubMed 
located_in integral component of mitochondrial inner membrane ISO
Inferred from Sequence Orthology
more info
 
is_active_in intrinsic component of membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in membrane ISO
Inferred from Sequence Orthology
more info
 
located_in mitochondrial inner membrane IDA
Inferred from Direct Assay
more info
PubMed 
part_of mitochondrial respiratory chain complex III IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in mitochondrion IDA
Inferred from Direct Assay
more info
PubMed 
located_in mitochondrion ISO
Inferred from Sequence Orthology
more info
 
part_of protein-containing complex IDA
Inferred from Direct Assay
more info
PubMed 
part_of respiratory chain complex III IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_001665.2 Reference assembly

    Range
    14136..15278
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_665641.1 cytochrome b (mitochondrion) [Rattus norvegicus]

    See identical proteins and their annotated locations for YP_665641.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    P00159
    UniProtKB/TrEMBL
    Q8HIC4
    Related
    ENSRNOP00000047954.3
    Conserved Domains (1) summary
    MTH00100
    Location:1379
    CYTB; cytochrome b; Provisional
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