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Nubp1 nucleotide binding protein 1 [ Mus musculus (house mouse) ]

Gene ID: 26425, updated on 23-Jun-2021

Summary

Official Symbol
Nubp1provided by MGI
Official Full Name
nucleotide binding protein 1provided by MGI
Primary source
MGI:MGI:1347073
See related
Ensembl:ENSMUSG00000022503
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Ubiquitous expression in thymus adult (RPKM 16.6), whole brain E14.5 (RPKM 14.9) and 28 other tissues See more
Orthologs
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Genomic context

See Nubp1 in Genome Data Viewer
Location:
16 A1; 16 5.61 cM
Exon count:
11
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (10229748..10242317)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (10411884..10424453)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 16 NC_000082.5 (10412031..10424521)

Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 30724 Neighboring gene tektin 5 Neighboring gene predicted gene, 41419 Neighboring gene trans-golgi network vesicle protein 23A Neighboring gene predicted gene, 41420 Neighboring gene class II transactivator Neighboring gene uncharacterized LOC115488669

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1) 
  • Chemically induced (ENU) (1)  1 citation

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables 4 iron, 4 sulfur cluster binding IEA
Inferred from Electronic Annotation
more info
 
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 
enables iron-sulfur cluster binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables iron-sulfur cluster binding ISO
Inferred from Sequence Orthology
more info
 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables nucleotide binding IEA
Inferred from Electronic Annotation
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
located_in cell projection IEA
Inferred from Electronic Annotation
more info
 
located_in cilium IEA
Inferred from Electronic Annotation
more info
 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in cytosol ISO
Inferred from Sequence Orthology
more info
 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 
located_in plasma membrane ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
cytosolic Fe-S cluster assembly factor NUBP1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_011955.2NP_036085.1  cytosolic Fe-S cluster assembly factor NUBP1

    See identical proteins and their annotated locations for NP_036085.1

    Status: VALIDATED

    Source sequence(s)
    BI134234, BM938167, BU614991, CJ183745, CX210766
    Consensus CDS
    CCDS27948.1
    UniProtKB/Swiss-Prot
    Q9R060
    Related
    ENSMUSP00000023146.5, ENSMUST00000023146.5
    Conserved Domains (2) summary
    COG1192
    Location:49309
    BcsQ; Cellulose biosynthesis protein BcsQ [Cell motility]
    pfam10609
    Location:53303
    ParA; NUBPL iron-transfer P-loop NTPase

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000082.7 Reference GRCm39 C57BL/6J

    Range
    10229748..10242317
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_384565.4 RNA Sequence

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