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E3B control protein E3 14.7K;membrane protein E3 RID-alpha;membrane protein E3 RID-beta [ Human mastadenovirus C ]

Gene ID: 2652988, updated on 31-Jan-2024

Summary

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Gene symbol
E3B
Gene description
control protein E3 14.7K;membrane protein E3 RID-alpha;membrane protein E3 RID-beta
Locus tag
HAdVC_gp13
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Human mastadenovirus C (serotype: Human adenovirus 2, acronym: HAdV-2, acronym: HAdV-C, nat-host: Homo sapiens)
Lineage
Viruses; Varidnaviria; Bamfordvirae; Preplasmiviricota; Tectiliviricetes; Rowavirales; Adenoviridae; Mastadenovirus
Old locus tag
HAdVCgp27
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Genomic context

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Sequence:
NC_001405.1 (27580..30864)

NC_001405.1Genomic Context describing neighboring genes Neighboring gene DNA polymerase;terminal protein precursor pTP Neighboring gene capsid protein precursor pIIIa;encapsidation protein 52K;protein 13.6K Neighboring gene core protein V;core protein precursor pVII;core protein precursor pX;penton base Neighboring gene capsid protein precursor pVI;hexon;protease Neighboring gene capsid protein precursor pVIII;encapsidation protein 22K;hexon assembly protein 100K;protein 33K Neighboring gene fiber Neighboring gene miscRNA Neighboring gene single-stranded DNA-binding protein Neighboring gene Neighboring gene control protein E3 12.5K;membrane glycoprotein E3 CR1-alpha;membrane glycoprotein E3 CR1-beta;membrane glycoprotein E3 gp19K Neighboring gene protein U Neighboring gene control protein E4 34K;control protein E4orf1;control protein E4orf2;control protein E4orf3;control protein E4orf4;control protein E4orf6/7

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_001405.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Whole genomic analysis of two potential recombinant strains within Human mastadenovirus species C previously found in Beijing, China. Mao N, et al. Sci Rep, 2017 Nov 13. PMID 29133946, Free PMC Article
  2. Pediatric Infections by Human mastadenovirus C Types 2, 89, and a Recombinant Type Detected in Japan between 2011 and 2018. Takahashi K, et al. Viruses, 2019 Dec 6. PMID 31817764, Free PMC Article
  3. Phylogenetic evidence for intratypic recombinant events in a novel human adenovirus C that causes severe acute respiratory infection in children. Wang Y, et al. Sci Rep, 2016 Mar 10. PMID 26960434, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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prim_transcript

  • Loc: 27609-29804 experiment = transcript mapping
  • Loc: 27609-30864 experiment = transcript mapping

regulatory

  • Loc: 27580-27585 regulatory_class = TATA_box
  • Loc: 28205-28210 regulatory_class = polyA_signal_sequence
  • Loc: 29769-29774 regulatory_class = polyA_signal_sequence
  • Loc: 30842-30847 regulatory_class = polyA_signal_sequence

General protein information

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Preferred Names
control protein E3 14.7K;membrane protein E3 RID-alpha;membrane protein E3 RID-beta
NP_597753.1
  • genus-specific; 12.5K family
YP_001551770.1
  • genus-specific; MP family
YP_001551771.1
  • genus-specific; MP family

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_001405.1 Reference assembly

    Range
    27580..30864
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_001551770.1 membrane protein E3 RID-alpha [Human mastadenovirus C]

    See identical proteins and their annotated locations for YP_001551770.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O55654, P15133
    UniProtKB/TrEMBL
    A0A0U5BLZ1, A0A1U9ALL9, A0A4P2SGY2, A0A5K6WAY6, E1ARS2, E1U5Q1, J7I6W5, Q779F4
    Conserved Domains (1) summary
    pfam03376
    Location:24 → 90
    Adeno_E3B; Adenovirus E3B protein

  2. YP_001551771.1 membrane protein E3 RID-beta [Human mastadenovirus C]

    See identical proteins and their annotated locations for YP_001551771.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    P03250
    UniProtKB/TrEMBL
    A0A0U5BYG0, A0A127WL25, A0A1U9ALM2, A0A4P2SIU0, A0A6M6AD57, A0A8F9RA80, J7IDM1, J9Z3F2, J9Z4U6, Q779F3, Q910Z2
    Conserved Domains (1) summary
    pfam04834
    Location:31 → 130
    Adeno_E3_14_5; Early E3 14.5 kDa protein

  3. NP_597753.1 control protein E3 14.7K [Human mastadenovirus C]

    See identical proteins and their annotated locations for NP_597753.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    P03249, P68976, P68977
    UniProtKB/TrEMBL
    A0A0P0LY88, A0A127WKD0, A0A1U9ALN5, A0A3Q9HL45, A0A3S9SSA4, A0A5J6SFD3, A0A5K6WDQ3, A0A7L4WHK9, E1ARS4, E1U5Q3, Q779F2
    Conserved Domains (1) summary
    pfam03307
    Location:10 → 126
    Adeno_E3_15_3; Adenovirus 15.3kD protein in E3 region
Nucleotide Protein
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