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L3 capsid protein precursor pVI;hexon;protease [ Human mastadenovirus C ]

Gene ID: 2652998, updated on 15-Aug-2018

Summary

Gene symbol
L3
Gene description
capsid protein precursor pVI;hexon;protease
Locus tag
HAdVC_gp08
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Human mastadenovirus C (serotype: Human adenovirus 2, acronym: HAdV-2, acronym: HAdV-C, nat-host: Homo sapiens, old-name: Human adenovirus C)
Lineage
Viruses; dsDNA viruses, no RNA stage; Adenoviridae; Mastadenovirus

Genomic context

Sequence:
NC_001405.1 (6008..22443)

NC_001405.1Genomic Context describing neighboring genes Neighboring gene control protein E1A;control protein E1A 243R Neighboring gene control protein E1B 19K;control protein E1B 55K Neighboring gene encapsidation protein IVa2 Neighboring gene capsid protein IX Neighboring gene DNA polymerase;terminal protein precursor pTP Neighboring gene capsid protein precursor pVIII;encapsidation protein 22K;hexon assembly protein 100K;protein 33K Neighboring gene fiber Neighboring gene core protein V;core protein precursor pVII;core protein precursor pX;penton base Neighboring gene capsid protein precursor pIIIa;encapsidation protein 52K;protein 13.6K Neighboring gene miscRNA Neighboring gene miscRNA Neighboring gene single-stranded DNA-binding protein Neighboring gene Neighboring gene control protein E3 12.5K;membrane glycoprotein E3 CR1-alpha;membrane glycoprotein E3 CR1-beta;membrane glycoprotein E3 gp19K Neighboring gene control protein E3 14.7K;membrane protein E3 RID-alpha;membrane protein E3 RID-beta Neighboring gene protein U

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General gene information

prim_transcript

  • Loc: 6039-14113 experiment = transcript mapping
  • Loc: 6039-17969 experiment = transcript mapping
  • Loc: 6039-22443 experiment = transcript mapping

regulatory

  • Loc: 14092-14097 regulatory_class = polyA_signal_sequence
  • Loc: 17949-17954 regulatory_class = polyA_signal_sequence
  • Loc: 22418-22423 regulatory_class = polyA_signal_sequence
  • Loc: 6008-6013 regulatory_class = TATA_box

General protein information

Preferred Names
capsid protein precursor pVI;hexon;protease
NP_040524.1
  • genus-common

VOG classification

Description:

  • VOGd0015 [S] Hexon-associated protein VI
  • Structural Proteins
NP_040525.1
  • genus-common

VOG classification

Description:

  • VOGd0016 [S] Hexon protein
  • Structural Proteins
NP_040526.1
  • genus-common

VOG classification

Description:

  • VOGd0017 [A] Virus core assembly adenovirus-like proteinase
  • Auxilary Proteins

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_001405.1 Reference assembly

    Range
    6008..22443
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_040524.1 capsid protein precursor pVI [Human mastadenovirus C]

    See identical proteins and their annotated locations for NP_040524.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    P03274
    UniProtKB/TrEMBL
    J9Z378
    Conserved Domains (1) summary
    pfam02993
    Location:6250
    MCPVI; Minor capsid protein VI
  2. NP_040525.1 hexon [Human mastadenovirus C]

    See identical proteins and their annotated locations for NP_040525.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    P03277
    UniProtKB/TrEMBL
    J9Z2Q0
    Conserved Domains (2) summary
    pfam01065
    Location:45593
    Adeno_hexon; Hexon, adenovirus major coat protein, N-terminal domain
    pfam03678
    Location:652874
    Adeno_hexon_C; Hexon, adenovirus major coat protein, C-terminal domain
  3. NP_040526.1 protease [Human mastadenovirus C]

    See identical proteins and their annotated locations for NP_040526.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    P03252
    UniProtKB/TrEMBL
    J9Z4X3
    Conserved Domains (1) summary
    pfam00770
    Location:21200
    Peptidase_C5; Adenovirus endoprotease
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