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Sowahc sosondowah ankyrin repeat domain family member C [ Mus musculus (house mouse) ]

Gene ID: 268301, updated on 5-Mar-2024

Summary

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Official Symbol
Sowahcprovided by MGI
Official Full Name
sosondowah ankyrin repeat domain family member Cprovided by MGI
Primary source
MGI:MGI:3606051
See related
Ensembl:ENSMUSG00000098188 AllianceGenome:MGI:3606051
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Ankrd57; 4921515A04Rik; 9430099J10Rik; C820004L04Rik
Summary
Orthologous to human SOWAHC (sosondowah ankyrin repeat domain family member C). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human all
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Genomic context

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See Sowahc in Genome Data Viewer
Location:
10 B4; 10 29.5 cM
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (59057744..59062256)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (59221922..59226434)

Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene septin 10 Neighboring gene predicted gene, 53588 Neighboring gene predicted gene, 23223 Neighboring gene STARR-positive B cell enhancer ABC_E6855 Neighboring gene predicted gene, 36257 Neighboring gene predicted gene, 40669 Neighboring gene STARR-seq mESC enhancer starr_26768 Neighboring gene predicted gene, 40670

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. An atlas of combinatorial transcriptional regulation in mouse and man. Ravasi T, et al. Cell, 2010 Mar 5. PMID 20211142, Free PMC Article
  2. A systems approach reveals that the myogenesis genome network is regulated by the transcriptional repressor RP58. Yokoyama S, et al. Dev Cell, 2009 Dec. PMID 20059953, Free PMC Article
  3. BioID screening of biotinylation sites using the avidin-like protein Tamavidin 2-REV identifies global interactors of stimulator of interferon genes (STING). Motani K, et al. J Biol Chem, 2020 Aug 7. PMID 32554809, Free PMC Article
  4. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
  5. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article

See all (14) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
ankyrin repeat domain-containing protein SOWAHC
Names
ankyrin repeat domain 57
ankyrin repeat domain-containing protein 57
protein sosondowah homolog C

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_172939.3 → NP_766527.3  ankyrin repeat domain-containing protein SOWAHC

    See identical proteins and their annotated locations for NP_766527.3

    Status: VALIDATED

    Source sequence(s)
    AK030944, AK050497, BE686181
    Consensus CDS
    CCDS59544.1
    UniProtKB/Swiss-Prot
    Q8BWN1, Q8C0J6
    Related
    ENSMUSP00000138351.2, ENSMUST00000182161.2
    Conserved Domains (3) summary
    cd00204
    Location:288 → 397
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam12796
    Location:259 → 359
    Ank_2; Ankyrin repeats (3 copies)
    sd00045
    Location:289 → 325
    ANK; ANK repeat [structural motif]

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000076.7 Reference GRCm39 C57BL/6J

    Range
    59057744..59062256
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8C0J6.2 GenPept UniProtKB/Swiss-Prot:Q8C0J6

Gene LinkOut

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