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B3galt1 UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1 [ Mus musculus (house mouse) ]

Gene ID: 26877, updated on 23-Jun-2021

Summary

Official Symbol
B3galt1provided by MGI
Official Full Name
UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1provided by MGI
Primary source
MGI:MGI:1349403
See related
Ensembl:ENSMUSG00000034780
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
beta3Gal-T1
Expression
Biased expression in CNS E18 (RPKM 4.5), frontal lobe adult (RPKM 4.2) and 10 other tissues See more
Orthologs
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Genomic context

See B3galt1 in Genome Data Viewer
Location:
2; 2 C1.3
Exon count:
14
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (67395528..67953226)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (67565689..68122882)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (67955770..67960747)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene predicted gene, 23328 Neighboring gene xin actin-binding repeat containing 2 Neighboring gene predicted gene 13601 Neighboring gene VISTA enhancer mm1717 Neighboring gene microRNA 7224 Neighboring gene 60S ribosomal protein L21 pseudogene Neighboring gene microRNA 6335 Neighboring gene predicted gene, 54157 Neighboring gene actin-like 6A pseudogene Neighboring gene serine/threonine kinase 39 Neighboring gene predicted gene, 50618 Neighboring gene predicted gene, 54158

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Process Evidence Code Pubs
involved_in galactosylceramide biosynthetic process ISO
Inferred from Sequence Orthology
more info
 
involved_in lipid glycosylation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in lipid glycosylation ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within oligosaccharide biosynthetic process IDA
Inferred from Direct Assay
more info
PubMed 
involved_in oligosaccharide biosynthetic process ISO
Inferred from Sequence Orthology
more info
 
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 
is_active_in Golgi membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in Golgi membrane IDA
Inferred from Direct Assay
more info
PubMed 
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
beta-1,3-galactosyltransferase 1
Names
UDP-galactose:beta-N-acetylglucosamine beta1, 3-galactosyltransferase 1
beta-1,3-GalTase 1
NP_001366253.1
NP_001366254.1
NP_001366255.1
NP_001366256.1
NP_001366257.1
NP_001366258.1
NP_064679.2
XP_036018121.1
XP_036018122.1
XP_036018123.1
XP_036018124.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001379324.1NP_001366253.1  beta-1,3-galactosyltransferase 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript. All seven variants encode the same protein.
    Source sequence(s)
    AL845519, AL928598, AL929125, AL929411, BX936296
    Conserved Domains (1) summary
    pfam01762
    Location:92279
    Galactosyl_T; Galactosyltransferase
  2. NM_001379325.1NP_001366254.1  beta-1,3-galactosyltransferase 1

    Status: VALIDATED

    Source sequence(s)
    AL845519, AL928598, AL929125, AL929411, BX936296
    Conserved Domains (1) summary
    pfam01762
    Location:92279
    Galactosyl_T; Galactosyltransferase
  3. NM_001379326.1NP_001366255.1  beta-1,3-galactosyltransferase 1

    Status: VALIDATED

    Source sequence(s)
    AL845519, AL928598, AL929125, AL929411, BX936296
    Conserved Domains (1) summary
    pfam01762
    Location:92279
    Galactosyl_T; Galactosyltransferase
  4. NM_001379327.1NP_001366256.1  beta-1,3-galactosyltransferase 1

    Status: VALIDATED

    Source sequence(s)
    AL845519, AL928598, AL929125, AL929411, BX936296
    Conserved Domains (1) summary
    pfam01762
    Location:92279
    Galactosyl_T; Galactosyltransferase
  5. NM_001379328.1NP_001366257.1  beta-1,3-galactosyltransferase 1

    Status: VALIDATED

    Source sequence(s)
    AL928598, AL929125, AL929411, BX936296
    Conserved Domains (1) summary
    pfam01762
    Location:92279
    Galactosyl_T; Galactosyltransferase
  6. NM_001379329.1NP_001366258.1  beta-1,3-galactosyltransferase 1

    Status: VALIDATED

    Source sequence(s)
    AL845519, AL928598, AL929125, AL929411, BX936296
    Conserved Domains (1) summary
    pfam01762
    Location:92279
    Galactosyl_T; Galactosyltransferase
  7. NM_020283.4NP_064679.2  beta-1,3-galactosyltransferase 1

    See identical proteins and their annotated locations for NP_064679.2

    Status: VALIDATED

    Source sequence(s)
    AK035215, BC094660, BX936296
    Consensus CDS
    CCDS16083.1
    UniProtKB/Swiss-Prot
    O54904
    UniProtKB/TrEMBL
    Q505A3
    Related
    ENSMUSP00000041343.4, ENSMUST00000042456.4
    Conserved Domains (1) summary
    pfam01762
    Location:92279
    Galactosyl_T; Galactosyltransferase

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    67395528..67953226
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036162229.1XP_036018122.1  beta-1,3-galactosyltransferase 1 isoform X1

    Conserved Domains (1) summary
    pfam01762
    Location:92279
    Galactosyl_T; Galactosyltransferase
  2. XM_036162230.1XP_036018123.1  beta-1,3-galactosyltransferase 1 isoform X1

    Conserved Domains (1) summary
    pfam01762
    Location:92279
    Galactosyl_T; Galactosyltransferase
  3. XM_036162231.1XP_036018124.1  beta-1,3-galactosyltransferase 1 isoform X2

  4. XM_036162228.1XP_036018121.1  beta-1,3-galactosyltransferase 1 isoform X1

    Conserved Domains (1) summary
    pfam01762
    Location:92279
    Galactosyl_T; Galactosyltransferase
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