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Rpl13 ribosomal protein L13 [ Mus musculus (house mouse) ]

Gene ID: 270106, updated on 23-Jun-2021

Summary

Official Symbol
Rpl13provided by MGI
Official Full Name
ribosomal protein L13provided by MGI
Primary source
MGI:MGI:105922
See related
Ensembl:ENSMUSG00000000740
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
L1; A52; L13
Expression
Ubiquitous expression in ovary adult (RPKM 1708.8), spleen adult (RPKM 1220.1) and 28 other tissues See more
Orthologs
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Genomic context

See Rpl13 in Genome Data Viewer
Location:
8; 8 E1
Exon count:
6
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (123829089..123831983)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (123102350..123105244)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 8 NC_000074.5 (125626250..125629144)

Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 35677 Neighboring gene SPG7, paraplegin matrix AAA peptidase subunit Neighboring gene small nucleolar RNA, C/D box 68 Neighboring gene microRNA 7079 Neighboring gene copine VII Neighboring gene microRNA 7080 Neighboring gene sulfotransferase family 5A, member 1

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables structural constituent of ribosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables structural constituent of ribosome ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
acts_upstream_of blastocyst development IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in bone development ISO
Inferred from Sequence Orthology
more info
 
involved_in translation IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in cytosol ISO
Inferred from Sequence Orthology
more info
 
located_in cytosol TAS
Traceable Author Statement
more info
 
part_of cytosolic large ribosomal subunit IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
part_of cytosolic large ribosomal subunit ISO
Inferred from Sequence Orthology
more info
 
located_in cytosolic ribosome ISO
Inferred from Sequence Orthology
more info
 
located_in endoplasmic reticulum ISO
Inferred from Sequence Orthology
more info
 
located_in nucleolus ISO
Inferred from Sequence Orthology
more info
 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
60S ribosomal protein L13
NP_058018.2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_016738.5NP_058018.2  60S ribosomal protein L13

    See identical proteins and their annotated locations for NP_058018.2

    Status: VALIDATED

    Source sequence(s)
    BC085493, CF751804, CO039212
    Consensus CDS
    CCDS22747.1
    UniProtKB/Swiss-Prot
    P47963
    UniProtKB/TrEMBL
    Q5RKP3
    Related
    ENSMUSP00000000756.6, ENSMUST00000000756.6
    Conserved Domains (1) summary
    pfam01294
    Location:8187
    Ribosomal_L13e; Ribosomal protein L13e

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000074.7 Reference GRCm39 C57BL/6J

    Range
    123829089..123831983
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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