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Golga5 golgi autoantigen, golgin subfamily a, 5 [ Mus musculus (house mouse) ]

Gene ID: 27277, updated on 23-Jun-2021

Summary

Official Symbol
Golga5provided by MGI
Official Full Name
golgi autoantigen, golgin subfamily a, 5provided by MGI
Primary source
MGI:MGI:1351475
See related
Ensembl:ENSMUSG00000021192
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Ret; Ret-II
Expression
Ubiquitous expression in bladder adult (RPKM 11.9), testis adult (RPKM 11.5) and 28 other tissues See more
Orthologs
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Genomic context

See Golga5 in Genome Data Viewer
Location:
12; 12 E
Exon count:
14
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (102435372..102464274)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (102469109..102498015)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 12 NC_000078.5 (103708120..103736117)

Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene legumain Neighboring gene predicted gene, 30198 Neighboring gene chromogranin A Neighboring gene inositol 1,3,4-triphosphate 5/6 kinase Neighboring gene microRNA 1936

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 
  • Endonuclease-mediated (3)  1 citation

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC102087

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables protein homodimerization activity ISO
Inferred from Sequence Orthology
more info
 
enables protein-macromolecule adaptor activity ISO
Inferred from Sequence Orthology
more info
 
enables small GTPase binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
involved_in Golgi organization IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in Golgi organization ISO
Inferred from Sequence Orthology
more info
 
involved_in Golgi vesicle transport ISO
Inferred from Sequence Orthology
more info
 
involved_in retrograde transport, vesicle recycling within Golgi IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in retrograde transport, vesicle recycling within Golgi ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
located_in COPI-coated vesicle membrane ISO
Inferred from Sequence Orthology
more info
 
located_in Golgi apparatus ISO
Inferred from Sequence Orthology
more info
 
located_in Golgi cis cisterna ISO
Inferred from Sequence Orthology
more info
 
is_active_in Golgi cisterna IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in Golgi cisterna ISO
Inferred from Sequence Orthology
more info
 
located_in Golgi medial cisterna ISO
Inferred from Sequence Orthology
more info
 
is_active_in Golgi membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in Golgi membrane IDA
Inferred from Direct Assay
more info
PubMed 
located_in Golgi membrane ISO
Inferred from Sequence Orthology
more info
 
located_in Golgi trans cisterna ISO
Inferred from Sequence Orthology
more info
 
located_in cis-Golgi network ISO
Inferred from Sequence Orthology
more info
 
located_in integral component of membrane ISO
Inferred from Sequence Orthology
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
golgin subfamily A member 5
Names
golgi autoantigen golgin subfamily a5
golgin-84
protein Sumiko

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001199004.1NP_001185933.1  golgin subfamily A member 5

    See identical proteins and their annotated locations for NP_001185933.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript. Variants 1 and 2 encode the same protein.
    Source sequence(s)
    AK138455, BC086782
    Consensus CDS
    CCDS36526.1
    UniProtKB/Swiss-Prot
    Q9QYE6
    Related
    ENSMUSP00000137305.2, ENSMUST00000179218.9
    Conserved Domains (2) summary
    COG1196
    Location:231565
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam09787
    Location:418723
    Golgin_A5; Golgin subfamily A member 5
  2. NM_013747.4NP_038775.1  golgin subfamily A member 5

    See identical proteins and their annotated locations for NP_038775.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR, compared to variant 1. Variants 1 and 2 encode the same protein.
    Source sequence(s)
    BC086782
    Consensus CDS
    CCDS36526.1
    UniProtKB/Swiss-Prot
    Q9QYE6
    Related
    ENSMUSP00000021609.9, ENSMUST00000021609.10
    Conserved Domains (2) summary
    COG1196
    Location:231565
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam09787
    Location:418723
    Golgin_A5; Golgin subfamily A member 5

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000078.7 Reference GRCm39 C57BL/6J

    Range
    102435372..102464274
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006515935.5XP_006515998.1  golgin subfamily A member 5 isoform X1

    See identical proteins and their annotated locations for XP_006515998.1

    UniProtKB/Swiss-Prot
    Q9QYE6
    Conserved Domains (2) summary
    COG1196
    Location:231565
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam09787
    Location:418723
    Golgin_A5; Golgin subfamily A member 5
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