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Nrep neuronal regeneration related protein [ Mus musculus (house mouse) ]

Gene ID: 27528, updated on 14-Aug-2021

Summary

Official Symbol
Nrepprovided by MGI
Official Full Name
neuronal regeneration related proteinprovided by MGI
Primary source
MGI:MGI:99444
See related
Ensembl:ENSMUSG00000042834
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
P31; Harp; P311; PTZ1; Sez1; PTZ17; SEZ17; D0H4S11; AI325076; D0H4S114
Expression
Biased expression in CNS E18 (RPKM 316.2), whole brain E14.5 (RPKM 274.8) and 8 other tissues See more
Orthologs
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Genomic context

See Nrep in Genome Data Viewer
Location:
18; 18 B1
Exon count:
8
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 18 NC_000084.7 (33570072..33597444, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 18 NC_000084.6 (33437019..33464365, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 18 NC_000084.5 (33596673..33623683, complement)

Chromosome 18 - NC_000084.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 46640 Neighboring gene VISTA enhancer mm76 Neighboring gene O-sialoglycoprotein endopeptidase pseudogene Neighboring gene predicted gene 10549 Neighboring gene predicted gene, 41684 Neighboring gene VISTA enhancer mm15

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in cytoplasm ISO
Inferred from Sequence Orthology
more info
 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in nucleus ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
neuronal regeneration-related protein
Names
high-altitude regulated protein
neuronal protein 3.1
protein p311

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001109988.1NP_001103458.1  neuronal regeneration-related protein

    See identical proteins and their annotated locations for NP_001103458.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1, 2, 3, 4 and 5 encode the same protein.
    Source sequence(s)
    AC115117, AK020629
    Consensus CDS
    CCDS37756.1
    UniProtKB/Swiss-Prot
    Q07475
    UniProtKB/TrEMBL
    Q542Q5
    Related
    ENSMUSP00000130297.2, ENSMUST00000168890.2
    Conserved Domains (1) summary
    pfam11092
    Location:368
    Alveol-reg_P311; Neuronal protein 3.1 (p311)
  2. NM_001109989.2NP_001103459.1  neuronal regeneration-related protein

    See identical proteins and their annotated locations for NP_001103459.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) differs in the 5' UTR compared to variant 1. Variants 1, 2, 3, 4 and 5 encode the same protein.
    Source sequence(s)
    AC115117, CX768079
    Consensus CDS
    CCDS37756.1
    UniProtKB/Swiss-Prot
    Q07475
    UniProtKB/TrEMBL
    Q542Q5
    Related
    ENSMUSP00000157912.2, ENSMUST00000237066.2
    Conserved Domains (1) summary
    pfam11092
    Location:368
    Alveol-reg_P311; Neuronal protein 3.1 (p311)
  3. NM_001267717.1NP_001254646.1  neuronal regeneration-related protein

    See identical proteins and their annotated locations for NP_001254646.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (5) differs in the 5' UTR compared to variant 1. Variants 1, 2, 3, 4 and 5 encode the same protein.
    Source sequence(s)
    AC115117
    Consensus CDS
    CCDS37756.1
    UniProtKB/Swiss-Prot
    Q07475
    UniProtKB/TrEMBL
    Q542Q5
    Conserved Domains (1) summary
    pfam11092
    Location:368
    Alveol-reg_P311; Neuronal protein 3.1 (p311)
  4. NM_053078.4NP_444308.1  neuronal regeneration-related protein

    See identical proteins and their annotated locations for NP_444308.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript and encodes the functional protein. Variants 1, 2, 3, 4 and 5 encode the same protein.
    Source sequence(s)
    AK048361, AV321356, CJ148521
    Consensus CDS
    CCDS37756.1
    UniProtKB/Swiss-Prot
    Q07475
    UniProtKB/TrEMBL
    Q542Q5
    Related
    ENSMUSP00000058132.9, ENSMUST00000051087.16
    Conserved Domains (1) summary
    pfam11092
    Location:368
    Alveol-reg_P311; Neuronal protein 3.1 (p311)

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000084.7 Reference GRCm39 C57BL/6J

    Range
    33570072..33597444 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030250488.2XP_030106348.1  neuronal regeneration-related protein isoform X1

    Conserved Domains (1) summary
    pfam11092
    Location:368
    Alveol-reg_P311; Neuronal protein 3.1 (p311)
  2. XM_036161164.1XP_036017057.1  neuronal regeneration-related protein isoform X1

    Conserved Domains (1) summary
    pfam11092
    Location:368
    Alveol-reg_P311; Neuronal protein 3.1 (p311)
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